RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 KIF25-AS1Q9Y6Z4 181 aa9.27□□□□□ -0.93
LIMCH1-220ENST00000514190 DNAH7Q8WXX0 4024 aa9.27□□□□□ -0.93
LIMCH1-220ENST00000514190 GAGE12BA1L429 117 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 GAGE7O76087 117 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 HLA-DQA1P01909 254 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 MT-ND6P03923 174 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 CRYGDP07320 174 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 GAGE12FP0CL80 117 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 GAGE12GP0CL81 117 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 GAGE12IP0CL82 117 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 SPART-AS1P0CW21 52 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 RPS10P46783 165 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 LINC00315P59091 139 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 CFAP126Q5VTH2 177 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 FAM104BQ5XKR9 115 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 POM121L12Q8N7R1 296 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 SAMD10Q9BYL1 202 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 DPH3P1Q9H4G8 78 aa9.26□□□□□ -0.93
LIMCH1-220ENST00000514190 A0A087WWL8 130 aa9.25□□□□□ -0.93
LIMCH1-220ENST00000514190 SMIM17P0DL12 118 aa9.25□□□□□ -0.93
LIMCH1-220ENST00000514190 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-220ENST00000514190 C18orf15Q96N68 181 aa9.25□□□□□ -0.93
LIMCH1-220ENST00000514190 TRAPPC1Q9Y5R8 145 aa9.25□□□□□ -0.93
LIMCH1-220ENST00000514190 U3KQK5 164 aa9.25□□□□□ -0.93
LIMCH1-220ENST00000514190 TRGV2A0A075B6R0 118 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 TRAV4A0A0B4J268 109 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 A0A0J9YWU9 116 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 TEX48A0A1B0GUV7 120 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 DEFB130BP0DP73 79 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 DEFB130AP0DP74 79 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 RAB4AP20338 218 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 UFSP1Q6NVU6 142 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 ZFP2Q6ZN57 461 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 AMN1Q8IY45 258 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 OR4C5Q8NGB2 326 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 RNF185Q96GF1 192 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 WWC2-AS2Q96NR7 200 aa9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 MRPL18Q9H0U6 180 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-220ENST00000514190 RHODO00212 210 aa9.23□□□□□ -0.93
LIMCH1-220ENST00000514190 CIDEAO60543 219 aa9.23□□□□□ -0.93
LIMCH1-220ENST00000514190 APCSP02743 223 aa9.23□□□□□ -0.93
LIMCH1-220ENST00000514190 FABP9Q0Z7S8 132 aa9.23□□□□□ -0.93
LIMCH1-220ENST00000514190 SLAQ13239 276 aa9.23□□□□□ -0.93
LIMCH1-220ENST00000514190 FRZBQ92765 325 aa9.23□□□□□ -0.93
LIMCH1-220ENST00000514190 CELA1Q9UNI1 258 aa9.23□□□□□ -0.93
LIMCH1-220ENST00000514190 DAD1P61803 113 aa9.22□□□□□ -0.93
LIMCH1-220ENST00000514190 MRPL51Q4U2R6 128 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-220ENST00000514190 FAM74A4Q5TZK3 123 aa9.22□□□□□ -0.93
LIMCH1-220ENST00000514190 ZNF479Q96JC4 524 aa9.22□□□□□ -0.93
LIMCH1-220ENST00000514190 PHOX2AO14813 284 aa9.21□□□□□ -0.94
LIMCH1-220ENST00000514190 IGHV3-53P01767 116 aa9.21□□□□□ -0.94
LIMCH1-220ENST00000514190 TRGC2P03986 189 aa9.21□□□□□ -0.94
LIMCH1-220ENST00000514190 MGPP08493 103 aa9.21□□□□□ -0.94
LIMCH1-220ENST00000514190 C12orf74Q32Q52 190 aa9.21□□□□□ -0.94
LIMCH1-220ENST00000514190 RYR3Q15413 4870 aa9.2□□□□□ -0.94
LIMCH1-220ENST00000514190 IGHV3-73A0A0B4J1V6 119 aa9.2□□□□□ -0.94
LIMCH1-220ENST00000514190 F5H697 171 aa9.2□□□□□ -0.94
LIMCH1-220ENST00000514190 KIAA1644Q3SXP7 199 aa9.2□□□□□ -0.94
LIMCH1-220ENST00000514190 MRAP2Q96G30 205 aa9.2□□□□□ -0.94
LIMCH1-220ENST00000514190 DYNC2H1Q8NCM8 4307 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-220ENST00000514190 PPBPP02775 128 aa9.19□□□□□ -0.94
LIMCH1-220ENST00000514190 CKS2P33552 79 aa9.19□□□□□ -0.94
LIMCH1-220ENST00000514190 FHL2Q14192 279 aa9.19□□□□□ -0.94
LIMCH1-220ENST00000514190 ZNF56Q15929 161 aa9.19□□□□□ -0.94
LIMCH1-220ENST00000514190 SUMO4Q6EEV6 95 aa9.19□□□□□ -0.94
LIMCH1-220ENST00000514190 Q6ZSN1 163 aa9.19□□□□□ -0.94
LIMCH1-220ENST00000514190 C11orf45Q8TAV5 145 aa9.19□□□□□ -0.94
LIMCH1-220ENST00000514190 TRAV26-2A0A0B4J265 109 aa9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 D6R8Y8 96 aa9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 M0QY20 66 aa9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 ATP5G1P05496 136 aa9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 GATA1P15976 413 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 ORMDL3Q8N138 153 aa9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 ALKBH7Q9BT30 221 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 EDA2RQ9HAV5 297 aa9.18□□□□□ -0.94
LIMCH1-220ENST00000514190 TRGV4A0A0C4DH28 118 aa9.17□□□□□ -0.94
LIMCH1-220ENST00000514190 SMKR1H3BMG3 65 aa9.17□□□□□ -0.94
LIMCH1-220ENST00000514190 GAS8-AS1O95177 125 aa9.17□□□□□ -0.94
LIMCH1-220ENST00000514190 PRELID3AQ96N28 172 aa9.17□□□□□ -0.94
LIMCH1-220ENST00000514190 TRBV6-4A0A1B0GX49 114 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 C1orf196B1AJZ1 125 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 H7C1H1 209 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 NCR2O95944 276 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 PPP1R17O96001 155 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 HOXA5P20719 270 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 NANOS2P60321 138 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 NRACQ8N912 160 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 HHLA3Q9XRX5 114 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 NACAE9PAV3 2078 aa9.16□□□□□ -0.94
LIMCH1-220ENST00000514190 TNFRSF6BO95407 300 aa9.15□□□□□ -0.94
LIMCH1-220ENST00000514190 SRIP30626 198 aa9.15□□□□□ -0.94
LIMCH1-220ENST00000514190 Q6ZTC4 211 aa9.15□□□□□ -0.94
LIMCH1-220ENST00000514190 SLC25A29Q8N8R3 303 aa9.15□□□□□ -0.94
LIMCH1-220ENST00000514190 NIT2Q9NQR4 276 aa9.15□□□□□ -0.94
LIMCH1-220ENST00000514190 LAMTOR2Q9Y2Q5 125 aa9.15□□□□□ -0.94
LIMCH1-220ENST00000514190 TRBV10-1A0A0K0K1A3 114 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 F5H768 121 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 K7EQD1 137 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 NPYP01303 97 aa9.14□□□□□ -0.95
LIMCH1-220ENST00000514190 P0DMU3 169 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms