RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 GNPNAT1Q96EK6 184 aaPredicted RBP2.4□□□□□ -2.03
NUP54-212ENST00000513248 MARVELD1Q9BSK0 173 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 NDFIP1Q9BT67 221 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 SLC25A2Q9BXI2 301 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 ZNF586Q9NXT0 402 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 TMEM14CQ9P0S9 112 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 NAGKQ9UJ70 344 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 FUT9Q9Y231 359 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 HSPB11Q9Y547 144 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 ALG5Q9Y673 324 aa2.4□□□□□ -2.03
NUP54-212ENST00000513248 FXYD6-FXYD2A0A087WZ82 144 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 BORCS7-ASMTA0A0B4J1R7 106 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 TRGV4A0A0C4DH28 118 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 A0A0J9YY99 117 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 PGPA6NDG6 321 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 FAM74A7A6NL05 159 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 K7EQM0 130 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 MRPS12O15235 138 aaKnown RBP2.39□□□□□ -2.03
NUP54-212ENST00000513248 HMGB3O15347 200 aaKnown RBP2.39□□□□□ -2.03
NUP54-212ENST00000513248 CRXO43186 299 aaPredicted RBP2.39□□□□□ -2.03
NUP54-212ENST00000513248 IGHV3-53P01767 116 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 M6PRP20645 277 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 ZNF138P52744 262 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 H2BFSP57053 126 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 IFITM3Q01628 133 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 IL15RAQ13261 267 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 BTN1A1Q13410 526 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 PDE6HQ13956 83 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 LAGE3Q14657 143 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 FAM74A3Q4VXF1 159 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 C1orf134Q5TEV5 83 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 LINC00336Q6ZUF6 198 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 SSX7Q7RTT5 188 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 ERASQ7Z444 233 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 EIF4E3Q8N5X7 224 aaKnown RBP2.39□□□□□ -2.03
NUP54-212ENST00000513248 C15orf54Q8N8G6 183 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 HSD17B11Q8NBQ5 300 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 OR10G4Q8NGN3 311 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 OR10G9Q8NGN4 311 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 Q8TAT8 98 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 RXFP4Q8TDU9 374 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 ODF3Q96PU9 254 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 AGPAT4-IT1Q9H0P7 198 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 C11orf1Q9H5F2 150 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 ABCA13Q86UQ4 5058 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 STAB2Q8WWQ8 2551 aa2.39□□□□□ -2.03
NUP54-212ENST00000513248 TRAV26-1A0A087WT03 109 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 A0A1B0GWB2 263 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 A8MTW9 85 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 EIF3GO75821 320 aaKnown RBP eCLIP2.38□□□□□ -2.03
NUP54-212ENST00000513248 PTTG1O95997 202 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 IFNA7P01567 189 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 MBP02144 154 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 CDC34P49427 236 aaPredicted RBP2.38□□□□□ -2.03
NUP54-212ENST00000513248 RAB2AP61019 212 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 KIAA1109Q2LD37 5005 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 RGS21Q2M5E4 152 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 TTC32Q5I0X7 151 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 AKR1C8PQ5T2L2 129 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 Q6ZTI0 123 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 GOLT1AQ6ZVE7 132 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 LYPD1Q8N2G4 141 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 FXYD5Q96DB9 178 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 FAM167A-AS1Q96KT0 104 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 ACTR3CQ9C0K3 210 aaPredicted RBP2.38□□□□□ -2.03
NUP54-212ENST00000513248 MRPL16Q9NX20 251 aaKnown RBP2.38□□□□□ -2.03
NUP54-212ENST00000513248 ZNF492Q9P255 531 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 KLF12Q9Y4X4 402 aa2.38□□□□□ -2.03
NUP54-212ENST00000513248 A0A096LPF7 62 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 TRAV21A0A0B4J279 112 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 RBAKDNA6NC62 111 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 C9JCJ5 164 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 F6UZH7 168 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 CXorf1O96002 111 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 NMBP08949 121 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 GIPP09681 153 aaPredicted RBP2.37□□□□□ -2.03
NUP54-212ENST00000513248 ARL14EPLP0DKL9 152 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 PPT1P50897 306 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 TCL1AP56279 114 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 GNG5P63218 68 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 SLAQ13239 276 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 TMEM183BQ1AE95 376 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 LGALS9BQ3B8N2 356 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 IBA57Q5T440 356 aaKnown RBP2.37□□□□□ -2.03
NUP54-212ENST00000513248 PRNTQ86SH4 94 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 TMEM183AQ8IXX5 376 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 OR2T35Q8NGX2 323 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 OR2G3Q8NGZ4 309 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 STOML3Q8TAV4 291 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 WFDC1Q9HC57 220 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 TREM1Q9NP99 234 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 OTORQ9NRC9 128 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 TMEM167BQ9NRX6 74 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 ICOSQ9Y6W8 199 aa2.37□□□□□ -2.03
NUP54-212ENST00000513248 NBDYA0A0U1RRE5 68 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 SERTM2A0A1B0GWG4 89 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 PLAC8L1A1L4L8 177 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 TAAR5O14804 337 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 ARPC5O15511 151 aa2.36□□□□□ -2.03
NUP54-212ENST00000513248 PFDN1O60925 122 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms