RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 RAB5CP51148 216 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 DNAJB13P59910 316 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 PPP3R1P63098 170 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 DEFB115Q30KQ5 88 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 TMEM244Q5VVB8 128 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 SAMD13Q5VXD3 122 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 ALKAL2Q6UX46 152 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 ZNF720Q7Z2F6 126 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 C10orf105Q8TEF2 133 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 TCEAL4Q96EI5 215 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 SNHG12Q9BXW3 62 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 SEC11CQ9BY50 192 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 PRO1933Q9H354 126 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 RASL12Q9NYN1 266 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 CCDC167Q9P0B6 97 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 CEP192Q8TEP8 1941 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 SNRNP200O75643 2136 aaKnown RBP1.3□□□□□ -2.2
USP53-204ENST00000507906 MYO7BQ6PIF6 2116 aa1.3□□□□□ -2.2
USP53-204ENST00000507906 GOLGA4Q13439 2230 aaKnown RBP1.3□□□□□ -2.2
USP53-204ENST00000507906 TNRC6BQ9UPQ9 1833 aaKnown RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 IGKV3-7A0A075B6H7 116 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 LOC110117498A0A087WWA1 95 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 C5orf58C9J3I9 102 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 E7EQ34 232 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 TSTD3H0UI37 97 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 M0R129 80 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 SNAPC5O75971 98 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 IFNA17P01571 189 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 MT-ND4LP03901 98 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 APODP05090 189 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 OR10J4P0C629 311 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 BCL2P10415 239 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 PIPP12273 146 aaPredicted RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 ZNF25P17030 456 aaPredicted RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 SDC2P34741 201 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 KRTAP10-4P60372 401 aaPredicted RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 MAXP61244 160 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 UBA52P62987 128 aaKnown RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 MRPS10P82664 201 aaKnown RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 NCMAPQ5T1S8 102 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 RPS27LQ71UM5 84 aaKnown RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 SVBPQ8N300 66 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 DEFB119Q8N690 84 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 FAM216BQ8N7L0 139 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 OR8J3Q8NGG0 315 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 LCN9Q8WX39 176 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 MRPL57Q9BQC6 102 aaKnown RBP1.29□□□□□ -2.2
USP53-204ENST00000507906 SMCO4Q9NRQ5 59 aa1.29□□□□□ -2.2
USP53-204ENST00000507906 MYOFQ9NZM1 2061 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 A0A087WSZ3 146 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 LOC285095A0A1B0GVY8 99 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 OR2T8A6NH00 312 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 C17orf112F2Z3M2 114 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 CCL16O15467 120 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 MT-ND6P03923 174 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 IL5P05113 134 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 FABP2P12104 132 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 FGF7P21781 194 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 S100GP29377 79 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 SRP9P49458 86 aaKnown RBP1.28□□□□□ -2.2
USP53-204ENST00000507906 POLR2JP52435 117 aaKnown RBP1.28□□□□□ -2.2
USP53-204ENST00000507906 CAV3P56539 151 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 SNRPFP62306 86 aaKnown RBP1.28□□□□□ -2.2
USP53-204ENST00000507906 BTG2P78543 158 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 TOMM20LQ6UXN7 152 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 C10orf111Q8N326 155 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 KCNRGQ8N5I3 272 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 TEX29Q8N6K0 151 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 TMEM203Q969S6 136 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 MUCL1Q96DR8 90 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 MCEEQ96PE7 176 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 TMEM138Q9NPI0 162 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 CALML5Q9NZT1 146 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 CACFD1Q9UGQ2 172 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 LAMTOR3Q9UHA4 124 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 ZFP30Q9Y2G7 519 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 DSPPQ9NZW4 1301 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 TNRC6AQ8NDV7 1962 aaKnown RBP1.28□□□□□ -2.2
USP53-204ENST00000507906 FREM3P0C091 2139 aa1.28□□□□□ -2.2
USP53-204ENST00000507906 EML6Q6ZMW3 1958 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 IGKV2-40A0A087WW87 121 aaPredicted RBP1.27□□□□□ -2.21
USP53-204ENST00000507906 FXYD6-FXYD2A0A087WZ82 144 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 hDV103S1A0JD37 113 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 C7orf77A4D0Y5 90 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 SNRPGP15A8MWD9 76 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 M0R143 59 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 GNGT2O14610 69 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 GEMIN2O14893 280 aaKnown RBP1.27□□□□□ -2.21
USP53-204ENST00000507906 CCL25O15444 150 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 ERC2-IT1O76042 136 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 IGKV2D-40P01614 121 aaPredicted RBP1.27□□□□□ -2.21
USP53-204ENST00000507906 CD14P08571 375 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 SLC25A4P12235 298 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 NDUFA6P56556 154 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 SNRPGP62308 76 aaKnown RBP1.27□□□□□ -2.21
USP53-204ENST00000507906 RPS25P62851 125 aaKnown RBP1.27□□□□□ -2.21
USP53-204ENST00000507906 C12orf73Q69YU5 71 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 HEPN1Q6WQI6 88 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 OR9Q1Q8NGQ5 310 aa1.27□□□□□ -2.21
USP53-204ENST00000507906 DIRC1Q969H9 104 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms