RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 CDKN1BP46527 198 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 PHLDA1Q8WV24 401 aaPredicted RBP7.33□□□□□ -1.24
CLIP1-204ENST00000501271 ODF3Q96PU9 254 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 TM2D2Q9BX73 214 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 MDFICQ9P1T7 246 aa7.33□□□□□ -1.24
CLIP1-204ENST00000501271 PRSS29PA6NIE9 313 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 LGALS1P09382 135 aaKnown RBP7.32□□□□□ -1.24
CLIP1-204ENST00000501271 SNRPD3P62318 126 aaKnown RBP7.32□□□□□ -1.24
CLIP1-204ENST00000501271 RNF151Q2KHN1 245 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 C9orf85Q96MD7 179 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 ZNF702PQ9H963 129 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 NHP2Q9NX24 153 aaKnown RBP7.32□□□□□ -1.24
CLIP1-204ENST00000501271 TSHBP01222 138 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 POLR2KP53803 58 aaKnown RBP7.32□□□□□ -1.24
CLIP1-204ENST00000501271 RPL32P62910 135 aaKnown RBP7.32□□□□□ -1.24
CLIP1-204ENST00000501271 SPINK13Q1W4C9 94 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 FAM74A4Q5TZK3 123 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 Q8N1Y9 231 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 TP53TG1Q9Y2A0 90 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 SPCS1Q9Y6A9 102 aa7.32□□□□□ -1.24
CLIP1-204ENST00000501271 UBR5O95071 2799 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-204ENST00000501271 OR11H12B2RN74 326 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 F5H697 171 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 FSHBP01225 129 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 CRYGDP07320 174 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 HOXD3P31249 432 aaPredicted RBP7.31□□□□□ -1.24
CLIP1-204ENST00000501271 SAMD5Q5TGI4 173 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 ZFP2Q6ZN57 461 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 OR11H1Q8NG94 326 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 OR11H2Q8NH07 326 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 CYSLTR1Q9Y271 337 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 LGALS9O00182 355 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 RPL39P62891 51 aaKnown RBP7.31□□□□□ -1.24
CLIP1-204ENST00000501271 Q6YL49 198 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 PTPN13Q12923 2485 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 TEX15Q9BXT5 2789 aa7.31□□□□□ -1.24
CLIP1-204ENST00000501271 ZNF469Q96JG9 3925 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-204ENST00000501271 MYMXA0A1B0GTQ4 84 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 SDHAF1A6NFY7 115 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 IGIPA6NJ69 53 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 MORN3Q6PF18 240 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-204ENST00000501271 BEX4Q9NWD9 120 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-204ENST00000501271 IGLV4-69A0A075B6H9 119 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 TRBV7-3A0A075B6L6 115 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 IGHV1OR15-1A0A075B7D0 117 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 E9PLD3 99 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 HOXA3O43365 443 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-204ENST00000501271 ELANEP08246 267 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 IGHV4-31P0DP07 118 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 FABP2P12104 132 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 COX6B1P14854 86 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 TAL2Q16559 108 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 BBC3Q96PG8 261 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-204ENST00000501271 HIST1H4GQ99525 98 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 PRADC1Q9BSG0 188 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 ABCA12Q86UK0 2595 aa7.3□□□□□ -1.24
CLIP1-204ENST00000501271 VCYO14598 125 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 SAP30O75446 220 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 EMP1P54849 157 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 KRTAP10-9P60411 292 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 DEFB136Q30KP8 78 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 AMTNQ6UX39 209 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 C18orf65Q6ZTR6 163 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 UBE2E2Q96LR5 201 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 CLUHP3Q96NS8 147 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 KIR2DL4Q99706 377 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 AKAP9Q99996 3911 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 TRBV27A0A0K0K1C4 114 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 C11orf86A6NJI1 115 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 PCP4P48539 62 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 ZNF56Q15929 161 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 OR5A1Q8NGJ0 315 aa7.29□□□□□ -1.24
CLIP1-204ENST00000501271 PRRC2AP48634 2157 aaKnown RBP7.29□□□□□ -1.24
CLIP1-204ENST00000501271 CREBBPQ92793 2442 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 TRBV6-5A0A0K0K1A5 114 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 M0QY20 66 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 RBMY1A1P0DJD3 496 aaKnown RBP7.28□□□□□ -1.24
CLIP1-204ENST00000501271 RBMY1CP0DJD4 496 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 SLURP1P55000 103 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 RBMY1FQ15415 496 aaKnown RBP7.28□□□□□ -1.24
CLIP1-204ENST00000501271 SYT8Q8NBV8 401 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 ZNF256Q9Y2P7 627 aaPredicted RBP7.28□□□□□ -1.24
CLIP1-204ENST00000501271 LINC01619G3V211 115 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 RIPPLY3P57055 190 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 C12orf74Q32Q52 190 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 TCTEX1D4Q5JR98 221 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 FOXI2Q6ZQN5 318 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 RNF152Q8N8N0 203 aa7.28□□□□□ -1.24
CLIP1-204ENST00000501271 ZNF815PA8K554 130 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 PMVKQ15126 192 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 CD300EQ496F6 205 aaPredicted RBP7.27□□□□□ -1.25
CLIP1-204ENST00000501271 PLEKHB2Q96CS7 222 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 TIMM17AQ99595 171 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 NAV2Q8IVL1 2488 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 KNCNA6PVL3 124 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 IGLL5B9A064 214 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 K7ERU9 68 aa7.27□□□□□ -1.25
CLIP1-204ENST00000501271 ZNF876PQ49A33 203 aa7.26□□□□□ -1.25
CLIP1-204ENST00000501271 KLHL30-AS1Q8NEE0 82 aa7.26□□□□□ -1.25
CLIP1-204ENST00000501271 TMEM141Q96I45 108 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms