RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 TRGC1P0CF51 173 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 HTN3P15516 51 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 POM121L12Q8N7R1 296 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 OR4C5Q8NGB2 326 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 C11orf45Q8TAV5 145 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 ZNF479Q96JC4 524 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 TEX48A0A1B0GUV7 120 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 A8MWV9 139 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 SMIM17P0DL12 118 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 C12orf74Q32Q52 190 aa13.75□□□□□ -0.21
USP39-218ENST00000493829 RS1O15537 224 aa13.74□□□□□ -0.21
USP39-218ENST00000493829 SMIM15Q7Z3B0 74 aa13.74□□□□□ -0.21
USP39-218ENST00000493829 FAM210BQ96KR6 192 aa13.74□□□□□ -0.21
USP39-218ENST00000493829 TRAV4A0A0B4J268 109 aa13.73□□□□□ -0.21
USP39-218ENST00000493829 A0A1B0GW15 77 aa13.73□□□□□ -0.21
USP39-218ENST00000493829 Q6ZTC4 211 aa13.73□□□□□ -0.21
USP39-218ENST00000493829 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.73□□□□□ -0.21
USP39-218ENST00000493829 TRBV24-1A0A075B6N3 115 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 CRYGDP07320 174 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 ZNF56Q15929 161 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 PIK3CD-AS1Q5SR53 167 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 AMN1Q8IY45 258 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 DPH3P1Q9H4G8 78 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 NACAE9PAV3 2078 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 S100A8P05109 93 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 NDUFAF3Q9BU61 184 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 TMEM191AQ9H0A3 160 aa13.72□□□□□ -0.21
USP39-218ENST00000493829 F5H697 171 aa13.71□□□□□ -0.21
USP39-218ENST00000493829 KIF25-AS1Q9Y6Z4 181 aa13.71□□□□□ -0.21
USP39-218ENST00000493829 STAB2Q8WWQ8 2551 aa13.7□□□□□ -0.22
USP39-218ENST00000493829 TMEM136Q6ZRR5 245 aa13.7□□□□□ -0.22
USP39-218ENST00000493829 EDA2RQ9HAV5 297 aa13.7□□□□□ -0.22
USP39-218ENST00000493829 TRAV26-2A0A0B4J265 109 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 TRGV4A0A0C4DH28 118 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 COLCA2A8K830 154 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 ATP5G1P05496 136 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 HOXA5P20719 270 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 UFSP1Q6NVU6 142 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 RHODO00212 210 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 RASL11AQ6T310 242 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 Q6ZSN1 163 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 C18orf15Q96N68 181 aa13.69□□□□□ -0.22
USP39-218ENST00000493829 F5H768 121 aa13.68□□□□□ -0.22
USP39-218ENST00000493829 LINC00315P59091 139 aa13.68□□□□□ -0.22
USP39-218ENST00000493829 FRZBQ92765 325 aa13.68□□□□□ -0.22
USP39-218ENST00000493829 RNF185Q96GF1 192 aa13.68□□□□□ -0.22
USP39-218ENST00000493829 NCR2O95944 276 aa13.67□□□□□ -0.22
USP39-218ENST00000493829 SLAQ13239 276 aa13.67□□□□□ -0.22
USP39-218ENST00000493829 FAM104BQ5XKR9 115 aa13.67□□□□□ -0.22
USP39-218ENST00000493829 GATD1Q8NB37 220 aa13.67□□□□□ -0.22
USP39-218ENST00000493829 SMKR1H3BMG3 65 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 RAB4AP20338 218 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 FHL2Q14192 279 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 SUMO4Q6EEV6 95 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 ZFP2Q6ZN57 461 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 HLA-DQA1P01909 254 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 RAB5AP20339 215 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 RPS10P46783 165 aaKnown RBP13.66□□□□□ -0.22
USP39-218ENST00000493829 MRPL51Q4U2R6 128 aaKnown RBP13.66□□□□□ -0.22
USP39-218ENST00000493829 GNB1LQ9BYB4 327 aa13.66□□□□□ -0.22
USP39-218ENST00000493829 MRPL18Q9H0U6 180 aaKnown RBP13.66□□□□□ -0.22
USP39-218ENST00000493829 GAS8-AS1O95177 125 aa13.65□□□□□ -0.22
USP39-218ENST00000493829 APCSP02743 223 aa13.65□□□□□ -0.22
USP39-218ENST00000493829 P0DMU3 169 aa13.65□□□□□ -0.22
USP39-218ENST00000493829 FAM231AP0DMU4 169 aa13.65□□□□□ -0.22
USP39-218ENST00000493829 FAM231CP0DMU5 169 aa13.65□□□□□ -0.22
USP39-218ENST00000493829 KIAA1644Q3SXP7 199 aa13.65□□□□□ -0.22
USP39-218ENST00000493829 TRAPPC1Q9Y5R8 145 aa13.65□□□□□ -0.22
USP39-218ENST00000493829 A0A0J9YY99 117 aa13.64□□□□□ -0.23
USP39-218ENST00000493829 DEFB131BA0A096LNP1 70 aa13.63□□□□□ -0.23
USP39-218ENST00000493829 GATA1P15976 413 aaPredicted RBP13.63□□□□□ -0.23
USP39-218ENST00000493829 COX19Q49B96 90 aa13.63□□□□□ -0.23
USP39-218ENST00000493829 SLC25A29Q8N8R3 303 aa13.63□□□□□ -0.23
USP39-218ENST00000493829 D6R8Y8 96 aa13.63□□□□□ -0.23
USP39-218ENST00000493829 MT-ND6P03923 174 aa13.63□□□□□ -0.23
USP39-218ENST00000493829 FABP9Q0Z7S8 132 aa13.63□□□□□ -0.23
USP39-218ENST00000493829 TGP01266 2768 aa13.62□□□□□ -0.23
USP39-218ENST00000493829 K7EQD1 137 aa13.62□□□□□ -0.23
USP39-218ENST00000493829 Q9UF83 564 aa13.62□□□□□ -0.23
USP39-218ENST00000493829 HHLA3Q9XRX5 114 aa13.62□□□□□ -0.23
USP39-218ENST00000493829 TRAV26-1A0A087WT03 109 aa13.61□□□□□ -0.23
USP39-218ENST00000493829 TRAV10A0A0B4J240 114 aa13.61□□□□□ -0.23
USP39-218ENST00000493829 LOC100131303A0A0U1RQF7 123 aa13.61□□□□□ -0.23
USP39-218ENST00000493829 CKS2P33552 79 aa13.61□□□□□ -0.23
USP39-218ENST00000493829 RPL39LQ96EH5 51 aaKnown RBP13.61□□□□□ -0.23
USP39-218ENST00000493829 CIDEAO60543 219 aa13.6□□□□□ -0.23
USP39-218ENST00000493829 MRAP2Q96G30 205 aa13.6□□□□□ -0.23
USP39-218ENST00000493829 PRO0255Q9UI72 69 aa13.6□□□□□ -0.23
USP39-218ENST00000493829 M0QY20 66 aa13.59□□□□□ -0.23
USP39-218ENST00000493829 TRGC2P03986 189 aa13.59□□□□□ -0.23
USP39-218ENST00000493829 CRYBA4P53673 196 aa13.59□□□□□ -0.23
USP39-218ENST00000493829 PHLDA1Q8WV24 401 aaPredicted RBP13.59□□□□□ -0.23
USP39-218ENST00000493829 PAX4O43316 350 aa13.59□□□□□ -0.23
USP39-218ENST00000493829 RHOHQ15669 191 aa13.59□□□□□ -0.23
USP39-218ENST00000493829 TRBV6-4A0A1B0GX49 114 aa13.58□□□□□ -0.24
USP39-218ENST00000493829 ORMDL3Q8N138 153 aa13.58□□□□□ -0.24
USP39-218ENST00000493829 GAGE12JA6NER3 117 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 H7C1H1 209 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 GAGE1Q13065 139 aa13.57□□□□□ -0.24
USP39-218ENST00000493829 GAGE4Q13068 117 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms