RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.34□□□□□ -2.19
VPS13A-211ENST00000484581 PDCD10Q9BUL8 212 aa1.34□□□□□ -2.19
VPS13A-211ENST00000484581 SPEF2Q9C093 1822 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 NAIPQ13075 1403 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 ZNF142P52746 1687 aaPredicted RBP1.33□□□□□ -2.2
VPS13A-211ENST00000484581 RREB1Q92766 1687 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 ZNF56Q15929 161 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 C2orf88Q9BSF0 95 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 SEC11CQ9BY50 192 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 RERGLQ9H628 205 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 LAMB1P07942 1786 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 ZDBF2Q9HCK1 2354 aa1.33□□□□□ -2.2
VPS13A-211ENST00000484581 LOC100130705A0A1B0GUX0 176 aa1.32□□□□□ -2.2
VPS13A-211ENST00000484581 A6NIN4 97 aa1.32□□□□□ -2.2
VPS13A-211ENST00000484581 SNCGO76070 127 aa1.32□□□□□ -2.2
VPS13A-211ENST00000484581 BLMP54132 1417 aaPredicted RBP1.32□□□□□ -2.2
VPS13A-211ENST00000484581 MUC22E2RYF6 1773 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-211ENST00000484581 BCL9LQ86UU0 1499 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 KMT2BQ9UMN6 2715 aaPredicted RBP1.31□□□□□ -2.2
VPS13A-211ENST00000484581 TRAV12-3A0A0B4J271 114 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 TCRBV3S1A0A5B6 114 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 UBE2G1P62253 170 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 RPL7L1Q6DKI1 246 aaKnown RBP1.31□□□□□ -2.2
VPS13A-211ENST00000484581 NAA60Q9H7X0 242 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 RPRMQ9NS64 109 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 DAPK1P53355 1430 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 CFTRP13569 1480 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 WDR7Q9Y4E6 1490 aa1.31□□□□□ -2.2
VPS13A-211ENST00000484581 NALCNQ8IZF0 1738 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 LINC00587B1AMM8 73 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 K7EIL1 84 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 FXYD1O00168 92 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 CBLN1P23435 193 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 NPC2P61916 151 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 KLKP1Q107X0 134 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 CYP2G1PQ6ZSU1 146 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 PPP1R1CQ8WVI7 109 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 PLAC4Q8WY50 150 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 SERP1Q9Y6X1 66 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 MBD5Q9P267 1494 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 PEG3Q9GZU2 1588 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 KNTC1P50748 2209 aa1.3□□□□□ -2.2
VPS13A-211ENST00000484581 PLXNA1Q9UIW2 1896 aa1.29□□□□□ -2.2
VPS13A-211ENST00000484581 COA4Q9NYJ1 87 aa1.29□□□□□ -2.2
VPS13A-211ENST00000484581 BET1LQ9NYM9 111 aa1.29□□□□□ -2.2
VPS13A-211ENST00000484581 FBN3Q75N90 2809 aa1.29□□□□□ -2.2
VPS13A-211ENST00000484581 IFNA17P01571 189 aa1.28□□□□□ -2.2
VPS13A-211ENST00000484581 AKAIN1P0CW23 69 aa1.28□□□□□ -2.2
VPS13A-211ENST00000484581 PP6455Q8WZ26 134 aa1.28□□□□□ -2.2
VPS13A-211ENST00000484581 TMEM203Q969S6 136 aa1.28□□□□□ -2.2
VPS13A-211ENST00000484581 TMEM14BQ9NUH8 114 aa1.28□□□□□ -2.2
VPS13A-211ENST00000484581 SCN3BQ9NY72 215 aa1.28□□□□□ -2.2
VPS13A-211ENST00000484581 ZNF518AQ6AHZ1 1483 aa1.28□□□□□ -2.2
VPS13A-211ENST00000484581 MED13LQ71F56 2210 aa1.27□□□□□ -2.21
VPS13A-211ENST00000484581 SMG6Q86US8 1419 aaKnown RBP1.27□□□□□ -2.21
VPS13A-211ENST00000484581 ELOF1P60002 83 aaKnown RBP1.27□□□□□ -2.21
VPS13A-211ENST00000484581 SPINK13Q1W4C9 94 aa1.27□□□□□ -2.21
VPS13A-211ENST00000484581 Q56UQ5 140 aa1.27□□□□□ -2.21
VPS13A-211ENST00000484581 Q6AWC8 147 aa1.27□□□□□ -2.21
VPS13A-211ENST00000484581 LSM10Q969L4 123 aaKnown RBP1.27□□□□□ -2.21
VPS13A-211ENST00000484581 MCRIP1C9JLW8 97 aa1.26□□□□□ -2.21
VPS13A-211ENST00000484581 IFNGP01579 166 aa1.26□□□□□ -2.21
VPS13A-211ENST00000484581 SSBP1Q04837 148 aaKnown RBP1.26□□□□□ -2.21
VPS13A-211ENST00000484581 C12orf73Q69YU5 71 aa1.26□□□□□ -2.21
VPS13A-211ENST00000484581 PARP14Q460N5 1801 aa1.26□□□□□ -2.21
VPS13A-211ENST00000484581 ABCA1O95477 2261 aa1.26□□□□□ -2.21
VPS13A-211ENST00000484581 PHIPQ8WWQ0 1821 aa1.25□□□□□ -2.21
VPS13A-211ENST00000484581 RBAKDNA6NC62 111 aa1.25□□□□□ -2.21
VPS13A-211ENST00000484581 CCL3L1P16619 93 aa1.25□□□□□ -2.21
VPS13A-211ENST00000484581 S100A7L2Q5SY68 101 aa1.25□□□□□ -2.21
VPS13A-211ENST00000484581 C20orf197Q8N268 126 aa1.25□□□□□ -2.21
VPS13A-211ENST00000484581 C10orf82Q8WW14 230 aa1.25□□□□□ -2.21
VPS13A-211ENST00000484581 NRXN2Q9P2S2 1712 aa1.24□□□□□ -2.21
VPS13A-211ENST00000484581 PIGBOS1A0A0B4J2F0 54 aa1.24□□□□□ -2.21
VPS13A-211ENST00000484581 SPAARA0A1B0GVQ0 90 aa1.24□□□□□ -2.21
VPS13A-211ENST00000484581 SPTSSBQ8NFR3 76 aa1.24□□□□□ -2.21
VPS13A-211ENST00000484581 IFT140Q96RY7 1462 aa1.24□□□□□ -2.21
VPS13A-211ENST00000484581 BCORL1Q5H9F3 1711 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 A0A096LNT2 108 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 F6UZH7 168 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 APOC4-APOC2K7ER74 178 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 CORTO00230 105 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 APOC2P02655 101 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 UBE2D1P51668 147 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 FXYD6P3P58550 94 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 CCL8P80075 99 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 SPINK9Q5DT21 86 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 FAM74A4Q5TZK3 123 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 ZNF818PQ6ZRF7 136 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 C4orf33Q8N1A6 199 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 Q8N8P6 123 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 GNG8Q9UK08 70 aa1.23□□□□□ -2.21
VPS13A-211ENST00000484581 KDM6BO15054 1643 aa1.22□□□□□ -2.21
VPS13A-211ENST00000484581 TRBV10-3A0A0K0K1G6 114 aa1.22□□□□□ -2.21
VPS13A-211ENST00000484581 TNFP01375 233 aa1.22□□□□□ -2.21
VPS13A-211ENST00000484581 SPINT3P49223 89 aa1.22□□□□□ -2.21
VPS13A-211ENST00000484581 COX7B2Q8TF08 81 aa1.22□□□□□ -2.21
VPS13A-211ENST00000484581 LY6G6CO95867 125 aa1.21□□□□□ -2.22
VPS13A-211ENST00000484581 RPL37P61927 97 aaKnown RBP1.21□□□□□ -2.22
VPS13A-211ENST00000484581 MRPS10P82664 201 aaKnown RBP1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms