RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 MUC4Q99102 2169 aa7.29□□□□□ -1.24
USP39-215ENST00000481409 TRGV1A0A0A0MS02 117 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 C1orf196B1AJZ1 125 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 H7C1H1 209 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 PHOX2AO14813 284 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 RS1O15537 224 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 EVI2AP22794 236 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 FABP9Q0Z7S8 132 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 KIF25-AS1Q9Y6Z4 181 aa7.28□□□□□ -1.24
USP39-215ENST00000481409 MGAM2Q2M2H8 2515 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 MUC21A0A0G2JKD1 596 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 MUC21A0A140T8X8 626 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 PRB2P02812 416 aaPredicted RBP7.27□□□□□ -1.25
USP39-215ENST00000481409 TRGC2P03986 189 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 PRM2P04554 102 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 CRYGDP07320 174 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 RAB4AP20338 218 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 SLAQ13239 276 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 CFAP126Q5VTH2 177 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 ORMDL3Q8N138 153 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.27□□□□□ -1.25
USP39-215ENST00000481409 OR4C5Q8NGB2 326 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 DKK2Q9UBU2 259 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 U3KQK5 164 aa7.27□□□□□ -1.25
USP39-215ENST00000481409 DNAH3Q8TD57 4116 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 TRGV2A0A075B6R0 118 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 CKS2P33552 79 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 RAB5BP61020 215 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 UFSP1Q6NVU6 142 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 Q6ZTI0 123 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 AMN1Q8IY45 258 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 C14orf178Q8N769 122 aaPredicted RBP7.26□□□□□ -1.25
USP39-215ENST00000481409 RNF185Q96GF1 192 aa7.26□□□□□ -1.25
USP39-215ENST00000481409 MRPL16Q9NX20 251 aaKnown RBP7.26□□□□□ -1.25
USP39-215ENST00000481409 LINC00315P59091 139 aa7.25□□□□□ -1.25
USP39-215ENST00000481409 SSTP61278 116 aa7.25□□□□□ -1.25
USP39-215ENST00000481409 OR10J3Q5JRS4 329 aa7.25□□□□□ -1.25
USP39-215ENST00000481409 FAM222AQ5U5X8 452 aa7.25□□□□□ -1.25
USP39-215ENST00000481409 TRBV10-1A0A0K0K1A3 114 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 TRBV6-4A0A1B0GX49 114 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 GAGE12BA1L429 117 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 PRSS47A8MTI9 375 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 GAGE7O76087 117 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 IGHV3-53P01767 116 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 GAGE12FP0CL80 117 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 GAGE12GP0CL81 117 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 GAGE12IP0CL82 117 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 EMP1P54849 157 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 DAD1P61803 113 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 ZNF56Q15929 161 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 MRPL51Q4U2R6 128 aaKnown RBP7.24□□□□□ -1.25
USP39-215ENST00000481409 DNAJC30Q96LL9 226 aa7.24□□□□□ -1.25
USP39-215ENST00000481409 ALKBH7Q9BT30 221 aaPredicted RBP7.24□□□□□ -1.25
USP39-215ENST00000481409 A0A087WWL8 130 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 TRBV6-5A0A0K0K1A5 114 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 D6R8Y8 96 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 F5H697 171 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 ATP5G1P05496 136 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 MGPP08493 103 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 RPL32P62910 135 aaKnown RBP7.23□□□□□ -1.25
USP39-215ENST00000481409 DEFA6Q01524 100 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 Q0VG73 95 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 FAM74A4Q5TZK3 123 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 PRELID3AQ96N28 172 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 C20orf78Q9BR46 151 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 JPT2Q9H910 190 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 NBEAL1Q6ZS30 2694 aa7.23□□□□□ -1.25
USP39-215ENST00000481409 K7EMI3 77 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 TCAPO15273 167 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 DEFB130BP0DP73 79 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 DEFB130AP0DP74 79 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 SRIP30626 198 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 SAMD10Q9BYL1 202 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 RETNQ9HD89 108 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 NIT2Q9NQR4 276 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 NOTCH1P46531 2555 aa7.22□□□□□ -1.25
USP39-215ENST00000481409 TRGV4A0A0C4DH28 118 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 M0QY20 66 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BKO60814 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BJP06899 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 GATA1P15976 413 aaPredicted RBP7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BOP23527 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BBP33778 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BDP58876 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BCP62807 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 RHOHQ15669 191 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST2H2BEQ16778 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 KIAA1644Q3SXP7 199 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.21□□□□□ -1.26
USP39-215ENST00000481409 SUMO4Q6EEV6 95 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BHQ93079 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 ZNF479Q96JC4 524 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BNQ99877 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 HIST1H2BMQ99879 126 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 PRADC1Q9BSG0 188 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 MAP1LC3AQ9H492 121 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 NXT2Q9NPJ8 142 aaKnown RBP7.21□□□□□ -1.26
USP39-215ENST00000481409 PRO0255Q9UI72 69 aa7.21□□□□□ -1.26
USP39-215ENST00000481409 A0A0J9YWU9 116 aa7.2□□□□□ -1.26
USP39-215ENST00000481409 H3BNG1 76 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms