RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-210	ENST00000480956	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.96	□□□□□ -1.61
LSM5-210	ENST00000480956	COL27A1	Q8IZC6	1860 aa	Predicted RBP	4.96	□□□□□ -1.62
LSM5-210	ENST00000480956	LOC107984156	A0A0G2JMH3	177 aa		4.96	□□□□□ -1.62
LSM5-210	ENST00000480956	KRTAP10-11	P60412	298 aa		4.96	□□□□□ -1.62
LSM5-210	ENST00000480956	ARL17A	Q8IVW1	177 aa		4.96	□□□□□ -1.62
LSM5-210	ENST00000480956	VSTM2A	Q8TAG5	236 aa		4.96	□□□□□ -1.62
LSM5-210	ENST00000480956	LCN9	Q8WX39	176 aa		4.96	□□□□□ -1.62
LSM5-210	ENST00000480956	UNC80	Q8N2C7	3258 aa		4.96	□□□□□ -1.62
LSM5-210	ENST00000480956	IGLV3-12	A0A075B6K2	115 aa		4.95	□□□□□ -1.62
LSM5-210	ENST00000480956	MUC21	A0A0G2JKD1	596 aa		4.95	□□□□□ -1.62
LSM5-210	ENST00000480956	SPANXN5	Q5MJ07	72 aa		4.95	□□□□□ -1.62
LSM5-210	ENST00000480956	MYO7A	Q13402	2215 aa		4.95	□□□□□ -1.62
LSM5-210	ENST00000480956	PDE4DIP	Q5VU43	2346 aa		4.95	□□□□□ -1.62
LSM5-210	ENST00000480956		A0A0J9YX75	114 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	IL5	P05113	134 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	C10orf105	Q8TEF2	133 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	SPTSSA	Q969W0	71 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	SMIM7	Q9BQ49	75 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	SCRT1	Q9BWW7	348 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	TMEM242	Q9NWH2	141 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	PLXNA3	P51805	1871 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	COL4A4	P53420	1690 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	PTPRD	P23468	1912 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	HELZ	P42694	1942 aa	Known RBP	4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	TRPM6	Q9BX84	2022 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	SPINT4	Q6UDR6	99 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	FP248	Q71RG6	208 aa	Predicted RBP	4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	TRANK1	O15050	2925 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	MALRD1	Q5VYJ5	2156 aa		4.94	□□□□□ -1.62
LSM5-210	ENST00000480956	PRUNE2	Q8WUY3	3088 aa		4.93	□□□□□ -1.62
LSM5-210	ENST00000480956	MYO9B	Q13459	2157 aa		4.93	□□□□□ -1.62
LSM5-210	ENST00000480956	COLCA2	A8K830	154 aa		4.93	□□□□□ -1.62
LSM5-210	ENST00000480956		E7EQL1	145 aa		4.93	□□□□□ -1.62
LSM5-210	ENST00000480956	LCE1A	Q5T7P2	110 aa		4.93	□□□□□ -1.62
LSM5-210	ENST00000480956	PATJ	Q8NI35	1801 aa		4.93	□□□□□ -1.62
LSM5-210	ENST00000480956	TRAV1-1	A0A0B4J248	108 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	SNCG	O76070	127 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	PROSC	O94903	275 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	NDUFB6	O95139	128 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	ZNF345	Q14585	488 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	ZNF826P	Q6ZT77	177 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	C20orf166-AS1	Q96NR2	134 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	HIGD2A	Q9BW72	106 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	TMEM106B	Q9NUM4	274 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	PSCA	O43653	123 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	BAALC-AS2	P0C853	105 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	MDK	P21741	143 aa	Predicted RBP	4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	MUCL1	Q96DR8	90 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	DSCR8	Q96T75	97 aa		4.92	□□□□□ -1.62
LSM5-210	ENST00000480956	TRIOBP	Q9H2D6	2365 aa		4.91	□□□□□ -1.62
LSM5-210	ENST00000480956	TMEM136	Q6ZRR5	245 aa		4.91	□□□□□ -1.62
LSM5-210	ENST00000480956	FAM19A2	Q8N3H0	131 aa		4.91	□□□□□ -1.62
LSM5-210	ENST00000480956	HMSD	A8MTL9	139 aa		4.9	□□□□□ -1.62
LSM5-210	ENST00000480956	IGLC1	P0CG04	106 aa		4.9	□□□□□ -1.62
LSM5-210	ENST00000480956	C12orf73	Q69YU5	71 aa		4.9	□□□□□ -1.62
LSM5-210	ENST00000480956	OR8B3	Q8NGG8	313 aa		4.9	□□□□□ -1.62
LSM5-210	ENST00000480956	TSKU	Q8WUA8	353 aa		4.9	□□□□□ -1.62
LSM5-210	ENST00000480956	IGKV3-15	P01624	115 aa		4.89	□□□□□ -1.63
LSM5-210	ENST00000480956	ATG5	Q9H1Y0	275 aa		4.89	□□□□□ -1.63
LSM5-210	ENST00000480956	LINC00312	Q9Y6C7	94 aa		4.89	□□□□□ -1.63
LSM5-210	ENST00000480956	C5orf67	F2Z3F1	127 aa		4.89	□□□□□ -1.63
LSM5-210	ENST00000480956	PIP	P12273	146 aa	Predicted RBP	4.89	□□□□□ -1.63
LSM5-210	ENST00000480956	RPS10P5	Q9NQ39	176 aa		4.89	□□□□□ -1.63
LSM5-210	ENST00000480956	VCAN	P13611	3396 aa		4.88	□□□□□ -1.63
LSM5-210	ENST00000480956	MT-ATP8	P03928	68 aa		4.88	□□□□□ -1.63
LSM5-210	ENST00000480956	DSCR4	P56555	118 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM5-210	ENST00000480956	KRTAP1-1	Q07627	177 aa		4.88	□□□□□ -1.63
LSM5-210	ENST00000480956	ARPIN	Q7Z6K5	226 aa		4.88	□□□□□ -1.63
LSM5-210	ENST00000480956	LINC00269	Q8N2A0	174 aa		4.88	□□□□□ -1.63
LSM5-210	ENST00000480956	C9orf106	Q8NAJ2	232 aa		4.88	□□□□□ -1.63
LSM5-210	ENST00000480956	IGLV10-54	A0A075B6I4	117 aa		4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	CCL16	O15467	120 aa		4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	PIRT	P0C851	137 aa		4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	SLC25A26	Q70HW3	274 aa		4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	DEFB106A	Q8N104	65 aa		4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	KLK12	Q9UKR0	248 aa		4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	SHROOM3	Q8TF72	1996 aa		4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	PRRC2B	Q5JSZ5	2229 aa	Known RBP	4.87	□□□□□ -1.63
LSM5-210	ENST00000480956	COL6A3	P12111	3177 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956		E7EUB6	86 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	UBL3	O95164	117 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	IL7	P13232	177 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	DCD	P81605	110 aa	Known RBP	4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	HMGN2P46	Q86SG4	172 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	TMEM254	Q8TBM7	123 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956		R4GN34	69 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	SNCA	P37840	140 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	CASC2	Q6XLA1	102 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	BET1L	Q9NYM9	111 aa		4.86	□□□□□ -1.63
LSM5-210	ENST00000480956	SCN3A	Q9NY46	2000 aa		4.85	□□□□□ -1.63
LSM5-210	ENST00000480956	SSSCA1	O60232	199 aa		4.85	□□□□□ -1.63
LSM5-210	ENST00000480956	MIF	P14174	115 aa		4.85	□□□□□ -1.63
LSM5-210	ENST00000480956	COX7C	P15954	63 aa		4.85	□□□□□ -1.63
LSM5-210	ENST00000480956	DYNLRB2	Q8TF09	96 aa		4.85	□□□□□ -1.63
LSM5-210	ENST00000480956	DPH3P1	Q9H4G8	78 aa		4.85	□□□□□ -1.63
LSM5-210	ENST00000480956	BRWD1	Q9NSI6	2320 aa		4.84	□□□□□ -1.63
LSM5-210	ENST00000480956	MYOF	Q9NZM1	2061 aa		4.84	□□□□□ -1.63
LSM5-210	ENST00000480956	TRAV14DV4	A0A0A6YYC5	116 aa		4.84	□□□□□ -1.63
LSM5-210	ENST00000480956	SSR2	P43308	183 aa		4.84	□□□□□ -1.63
LSM5-210	ENST00000480956	ERH	P84090	104 aa	Known RBP	4.84	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms