RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 Q8N9W7 124 aa14.18□□□□□ -0.14
CCDC88B-207ENST00000479965 IGIPA6NJ69 53 aa14.17□□□□□ -0.14
CCDC88B-207ENST00000479965 ZFAND2AQ8N6M9 145 aa14.17□□□□□ -0.14
CCDC88B-207ENST00000479965 C3orf56Q8N813 242 aa14.17□□□□□ -0.14
CCDC88B-207ENST00000479965 EIF4EBP3O60516 100 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-207ENST00000479965 FAM110DQ8TAY7 271 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-207ENST00000479965 ODF3BA8MYP8 253 aa14.16□□□□□ -0.14
CCDC88B-207ENST00000479965 LINC01620Q4KN68 170 aa14.16□□□□□ -0.14
CCDC88B-207ENST00000479965 ADARB2-AS1A8MUL3 147 aa14.16□□□□□ -0.14
CCDC88B-207ENST00000479965 PRSS2P07478 247 aa14.16□□□□□ -0.14
CCDC88B-207ENST00000479965 ATXN8Q156A1 80 aa14.15□□□□□ -0.14
CCDC88B-207ENST00000479965 RPL32P62910 135 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-207ENST00000479965 AKAP6Q13023 2319 aa14.15□□□□□ -0.14
CCDC88B-207ENST00000479965 EEF1AKMT3Q96AZ1 226 aa14.15□□□□□ -0.14
CCDC88B-207ENST00000479965 MRPL53Q96EL3 112 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-207ENST00000479965 PPP1R17O96001 155 aa14.15□□□□□ -0.14
CCDC88B-207ENST00000479965 TMEM263Q8WUH6 116 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-207ENST00000479965 SDHAF1A6NFY7 115 aa14.14□□□□□ -0.15
CCDC88B-207ENST00000479965 RNASE3P12724 160 aaKnown RBP14.14□□□□□ -0.15
CCDC88B-207ENST00000479965 Q8N6K4 173 aa14.14□□□□□ -0.15
CCDC88B-207ENST00000479965 AKAP13Q12802 2813 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 IGHV1-69DA0A0B4J2H0 117 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 LINC00477Q96M19 166 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 AMELXQ99217 191 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 ZNF580Q9UK33 172 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 CENPVL3A0A0U1RRI6 287 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 RIF1Q5UIP0 2472 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 BSNQ9UPA5 3926 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 NPC2P61916 151 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 SUMO4Q6EEV6 95 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 CFAP161Q6P656 301 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 C9orf139Q6ZV77 190 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 ODF3Q96PU9 254 aa14.13□□□□□ -0.15
CCDC88B-207ENST00000479965 VCYO14598 125 aa14.12□□□□□ -0.15
CCDC88B-207ENST00000479965 H3BMM0 161 aa14.12□□□□□ -0.15
CCDC88B-207ENST00000479965 C2orf82Q6UX34 121 aa14.12□□□□□ -0.15
CCDC88B-207ENST00000479965 UBE2WQ96B02 151 aa14.12□□□□□ -0.15
CCDC88B-207ENST00000479965 ZNF876PQ49A33 203 aa14.11□□□□□ -0.15
CCDC88B-207ENST00000479965 TMEM141Q96I45 108 aa14.11□□□□□ -0.15
CCDC88B-207ENST00000479965 M0R1W7 72 aa14.11□□□□□ -0.15
CCDC88B-207ENST00000479965 PTPRZ1P23471 2315 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 MEIG1Q5JSS6 88 aa14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 OTOGLQ3ZCN5 2332 aa14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 MUC4Q99102 2169 aa14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 TRIAP1O43715 76 aa14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 GRNP28799 593 aaKnown RBP14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 PRR30Q53SZ7 412 aaPredicted RBP14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 ZNF56Q15929 161 aa14.1□□□□□ -0.15
CCDC88B-207ENST00000479965 POLR2KP53803 58 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-207ENST00000479965 UNQ9165/PRO28630Q6UXU0 137 aa14.09□□□□□ -0.15
CCDC88B-207ENST00000479965 LENEPQ9Y5L5 61 aa14.09□□□□□ -0.15
CCDC88B-207ENST00000479965 TIMM17AQ99595 171 aa14.09□□□□□ -0.15
CCDC88B-207ENST00000479965 DUX3Q96PT4 197 aa14.08□□□□□ -0.15
CCDC88B-207ENST00000479965 ITLN2Q8WWU7 325 aaPredicted RBP14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 SPXQ9BT56 116 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 TTC28Q96AY4 2481 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 A0A0B4J2C4 111 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 A0A0J9YXV3 536 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 TRBV10-2A0A0K0K1G8 114 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 P0DMU3 169 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 FAM231AP0DMU4 169 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 FAM231CP0DMU5 169 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 PRO3102Q9H379 93 aa14.08□□□□□ -0.16
CCDC88B-207ENST00000479965 TLN1Q9Y490 2541 aaKnown RBP14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 TRBV7-1A0A0A6YYK4 115 aa14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 FOXC1Q12948 553 aa14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 TMEM219Q86XT9 240 aa14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 CHCHD5Q9BSY4 110 aa14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 LEPROTO15243 131 aa14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 LINC00315P59091 139 aa14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 Q6ZSV7 163 aa14.07□□□□□ -0.16
CCDC88B-207ENST00000479965 OVOL1O14753 267 aa14.06□□□□□ -0.16
CCDC88B-207ENST00000479965 TRBV12-3P01733 135 aa14.06□□□□□ -0.16
CCDC88B-207ENST00000479965 EBI3Q14213 229 aa14.06□□□□□ -0.16
CCDC88B-207ENST00000479965 TMEM223A0PJW6 202 aa14.06□□□□□ -0.16
CCDC88B-207ENST00000479965 CLEC2BQ92478 149 aa14.06□□□□□ -0.16
CCDC88B-207ENST00000479965 FAM110AQ9BQ89 295 aa14.06□□□□□ -0.16
CCDC88B-207ENST00000479965 KIF25-AS1Q9Y6Z4 181 aa14.06□□□□□ -0.16
CCDC88B-207ENST00000479965 ZFHX3Q15911 3703 aa14.05□□□□□ -0.16
CCDC88B-207ENST00000479965 U3KQE9 123 aa14.05□□□□□ -0.16
CCDC88B-207ENST00000479965 LGALS9O00182 355 aa14.05□□□□□ -0.16
CCDC88B-207ENST00000479965 IGHV3-11P01762 117 aa14.05□□□□□ -0.16
CCDC88B-207ENST00000479965 ZFP36P26651 326 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-207ENST00000479965 COL6A6A6NMZ7 2263 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 TRAV12-3A0A0B4J271 114 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 M0R2P5 195 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 ZNF22P17026 224 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 UBE2E1P51965 193 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 PIP4P1Q86T03 277 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 IGHV4OR15-8A0A075B7B6 117 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 A0A087WW49 117 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 MINOS1Q5TGZ0 78 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 DEFB123Q8N688 67 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 MINOS1-NBL1R4GNA1 71 aa14.04□□□□□ -0.16
CCDC88B-207ENST00000479965 A0A0J9YXY3 114 aa14.03□□□□□ -0.16
CCDC88B-207ENST00000479965 IGKV3-20P01619 116 aa14.03□□□□□ -0.16
CCDC88B-207ENST00000479965 OOSP1A8MZH6 123 aa14.02□□□□□ -0.16
CCDC88B-207ENST00000479965 H7C423 109 aa14.02□□□□□ -0.16
CCDC88B-207ENST00000479965 M0QXV9 152 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms