RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 IGLV1-47P01700 117 aa10.44□□□□□ -0.74
USP42-206ENST00000479544 ZNF493Q6ZR52 646 aa10.44□□□□□ -0.74
USP42-206ENST00000479544 BAHCC1Q9P281 2608 aa10.44□□□□□ -0.74
USP42-206ENST00000479544 IGF1P05019 195 aa10.44□□□□□ -0.74
USP42-206ENST00000479544 IGFL3Q6UXB1 125 aa10.44□□□□□ -0.74
USP42-206ENST00000479544 PLA2G2AP14555 144 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 FANCD2OSQ96PS1 177 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 NDUFA12Q9UI09 145 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 BUB3O43684 328 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 CARD19Q96LW7 228 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 IGLV11-55A0A075B6I3 123 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 TRBV7-1A0A0A6YYK4 115 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 C9orf153Q5TBE3 101 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 ZNF843Q8N446 348 aa10.43□□□□□ -0.74
USP42-206ENST00000479544 HIST1H4AP62805 103 aaKnown RBP10.42□□□□□ -0.74
USP42-206ENST00000479544 Q6ZUT4 128 aa10.42□□□□□ -0.74
USP42-206ENST00000479544 KAAG1Q9UBP8 84 aa10.42□□□□□ -0.74
USP42-206ENST00000479544 UFSP1Q6NVU6 142 aa10.42□□□□□ -0.74
USP42-206ENST00000479544 Q6ZQT7 251 aa10.42□□□□□ -0.74
USP42-206ENST00000479544 MUSTN1Q8IVN3 82 aa10.42□□□□□ -0.74
USP42-206ENST00000479544 FAM110DQ8TAY7 271 aaPredicted RBP10.42□□□□□ -0.74
USP42-206ENST00000479544 BAALCQ8WXS3 180 aa10.42□□□□□ -0.74
USP42-206ENST00000479544 TCL1BO95988 128 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 IGFL2Q6UWQ7 119 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 PRIMA1Q86XR5 153 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 MYO15AQ9UKN7 3530 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 GATD1Q8NB37 220 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 LY6G5BQ8NDX9 201 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 IGHV7-81A0A0B4J1V7 117 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 USP24Q9UPU5 2620 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 MOB4Q9Y3A3 225 aa10.41□□□□□ -0.74
USP42-206ENST00000479544 A0A1W2PRX2 142 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 LINC00158P58513 81 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 MINOS1Q5TGZ0 78 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 IGF2-ASQ6U949 168 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 MINOS1-NBL1R4GNA1 71 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 INS-IGF2F8WCM5 200 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 M0R1W7 72 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 UBE2E2Q96LR5 201 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 CITED1Q99966 193 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 TM2D2Q9BX73 214 aa10.4□□□□□ -0.74
USP42-206ENST00000479544 SHISA9B4DS77 424 aa10.4□□□□□ -0.75
USP42-206ENST00000479544 WI2-2373I1.2A0A1W2PRP0 233 aa10.39□□□□□ -0.75
USP42-206ENST00000479544 MGAQ8IWI9 3026 aa10.39□□□□□ -0.75
USP42-206ENST00000479544 A0A096LNJ9 63 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 USP34Q70CQ2 3546 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 COL4A2P08572 1712 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 TMEM101Q96IK0 257 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 YAE1D1Q9NRH1 226 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 LINC01548A6NM66 108 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 IGLC6P0CF74 106 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 TRGV2A0A075B6R0 118 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 RNF185Q96GF1 192 aa10.38□□□□□ -0.75
USP42-206ENST00000479544 DAZ1Q9NQZ3 744 aaKnown RBP10.38□□□□□ -0.75
USP42-206ENST00000479544 LRRK2Q5S007 2527 aa10.37□□□□□ -0.75
USP42-206ENST00000479544 PTPRBP23467 1997 aa10.37□□□□□ -0.75
USP42-206ENST00000479544 PIMREGQ9BSJ6 248 aa10.37□□□□□ -0.75
USP42-206ENST00000479544 PAX4O43316 350 aa10.37□□□□□ -0.75
USP42-206ENST00000479544 CLEC2BQ92478 149 aa10.37□□□□□ -0.75
USP42-206ENST00000479544 LINC01620Q4KN68 170 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 NDUFA11Q86Y39 141 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 BBC3Q96PG8 261 aaPredicted RBP10.36□□□□□ -0.75
USP42-206ENST00000479544 XGP55808 180 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 SUMO4Q6EEV6 95 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 TEX49A0A1B0GTD5 131 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 OOSP1A8MZH6 123 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 CEMP1Q6PRD7 247 aaPredicted RBP10.36□□□□□ -0.75
USP42-206ENST00000479544 TMEM190Q8WZ59 177 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 TMEM141Q96I45 108 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 PRRC2AP48634 2157 aaKnown RBP10.36□□□□□ -0.75
USP42-206ENST00000479544 EYSQ5T1H1 3165 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 TRGV1A0A0A0MS02 117 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 HOXD3P31249 432 aaPredicted RBP10.36□□□□□ -0.75
USP42-206ENST00000479544 DEFB131AP59861 70 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 HHLA3Q9XRX5 114 aa10.36□□□□□ -0.75
USP42-206ENST00000479544 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.35□□□□□ -0.75
USP42-206ENST00000479544 IGKV2-29A2NJV5 120 aaPredicted RBP10.35□□□□□ -0.75
USP42-206ENST00000479544 C8orf31Q8N9H6 132 aa10.35□□□□□ -0.75
USP42-206ENST00000479544 MAPK1IP1LQ8NDC0 245 aa10.35□□□□□ -0.75
USP42-206ENST00000479544 C11orf21Q9P2W6 132 aa10.35□□□□□ -0.75
USP42-206ENST00000479544 CENPEQ02224 2701 aa10.34□□□□□ -0.75
USP42-206ENST00000479544 MRPL23Q16540 153 aaKnown RBP10.34□□□□□ -0.75
USP42-206ENST00000479544 EXPH5Q8NEV8 1989 aa10.34□□□□□ -0.75
USP42-206ENST00000479544 I3L3M4 83 aa10.34□□□□□ -0.75
USP42-206ENST00000479544 TRBV12-3P01733 135 aa10.34□□□□□ -0.75
USP42-206ENST00000479544 HERV-K104P63124 156 aa10.34□□□□□ -0.75
USP42-206ENST00000479544 MORN3Q6PF18 240 aaPredicted RBP10.34□□□□□ -0.75
USP42-206ENST00000479544 UNQ9165/PRO28630Q6UXU0 137 aa10.34□□□□□ -0.75
USP42-206ENST00000479544 COPS9Q8WXC6 57 aa10.34□□□□□ -0.75
USP42-206ENST00000479544 TRGV11A0A075B6L2 103 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 CHD6Q8TD26 2715 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 PFN2P35080 140 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 CCL19Q99731 98 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 LINC00574Q9H8X3 128 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 TNRC6BQ9UPQ9 1833 aaKnown RBP10.33□□□□□ -0.76
USP42-206ENST00000479544 HOXB4P17483 251 aaPredicted RBP10.33□□□□□ -0.76
USP42-206ENST00000479544 Q8N9W7 124 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 RASL10AQ92737 203 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 TOMM6Q96B49 74 aa10.33□□□□□ -0.76
USP42-206ENST00000479544 SPTBN5Q9NRC6 3674 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms