RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 Q6ZQT7 251 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 DYSFO75923 2080 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 TIMM17AQ99595 171 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 LINC00173Q6ZV60 143 aa6.88□□□□□ -1.31
SYNE1-224ENST00000478916 GATA1P15976 413 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-224ENST00000478916 C3orf22Q8N5N4 141 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 ZNF491Q8N8L2 437 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 C10orf105Q8TEF2 133 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 C17orf77Q96MU5 243 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 FAM110AQ9BQ89 295 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 NUPR1O60356 82 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 ADORA2A-AS1P86434 159 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 DIAPH2-AS1Q14236 149 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 DIRC1Q969H9 104 aa6.87□□□□□ -1.31
SYNE1-224ENST00000478916 NCR3O14931 201 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 PLA2G5P39877 138 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 CTSZQ9UBR2 303 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 PIFOQ8TCI5 191 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 TOMM6Q96B49 74 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 C1orf147Q96MC9 270 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-224ENST00000478916 C11orf86A6NJI1 115 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 IGKV4-1P06312 121 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 ATP5EP56381 51 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-224ENST00000478916 ANAPC1Q9H1A4 1944 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 A0A0J9YXV3 536 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 PRR15LQ9BU68 103 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 CENPVL3A0A0U1RRI6 287 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 H0Y9J4 135 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 K7EQD1 137 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 C20orf197Q8N268 126 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 AGPAT4-IT1Q9H0P7 198 aa6.86□□□□□ -1.31
SYNE1-224ENST00000478916 RNF152Q8N8N0 203 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 GTF3C1Q12789 2109 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 USF3Q68DE3 2245 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 A0A0J9YY99 117 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 WI2-2373I1.2A0A1W2PRP0 233 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 GP9P14770 177 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 DAND5Q8N907 189 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 Q9HAA7 133 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 HELZP42694 1942 aaKnown RBP6.85□□□□□ -1.31
SYNE1-224ENST00000478916 IGLV3-1P01715 115 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 IGHV4-38-2P0DP08 117 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 ZGRF1Q86YA3 2104 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 RSPO1Q2MKA7 263 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-224ENST00000478916 ZNF407Q9C0G0 2248 aa6.85□□□□□ -1.31
SYNE1-224ENST00000478916 BPY2O14599 106 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 CASC2Q6XLA1 102 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 NPBQ8NG41 125 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 FGF23Q9GZV9 251 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-224ENST00000478916 UBE2AP49459 152 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 SEM1Q6ZVN7 128 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 WNK2Q9Y3S1 2297 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 IGLC6P0CF74 106 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 PCNX2A6NKB5 2137 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 ZNF524Q96C55 264 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 C16orf54Q6UWD8 224 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 PTH2Q96A98 100 aa6.84□□□□□ -1.31
SYNE1-224ENST00000478916 MT-ATP8P03928 68 aa6.84□□□□□ -1.32
SYNE1-224ENST00000478916 DEFB136Q30KP8 78 aa6.84□□□□□ -1.32
SYNE1-224ENST00000478916 C4orf48Q5BLP8 95 aa6.84□□□□□ -1.32
SYNE1-224ENST00000478916 PLXND1Q9Y4D7 1925 aa6.84□□□□□ -1.32
SYNE1-224ENST00000478916 DENND4AQ7Z401 1863 aa6.84□□□□□ -1.32
SYNE1-224ENST00000478916 TCL1BO95988 128 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 PKDREJQ9NTG1 2253 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 NDUFA11Q86Y39 141 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 C16orf74Q96GX8 76 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 NDUFA1O15239 70 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 ROS1P08922 2347 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 ATP5EP2Q5VTU8 51 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 USP17L23D6RBM5 183 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 NDUFC1O43677 76 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 Q8N1Y9 231 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 IGKV2D-26A0A0A0MRZ7 120 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 GYPEP15421 78 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 SLURP1P55000 103 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 C11orf53Q8IXP5 236 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 ARHGAP21Q5T5U3 1957 aa6.83□□□□□ -1.32
SYNE1-224ENST00000478916 IGLV10-54A0A075B6I4 117 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 C1orf195Q5TG92 126 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 SDIM1Q6ZPB5 146 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 ODF1Q14990 250 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 C20orf173Q96LM9 149 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 SPART-AS1P0CW21 52 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 IGHV1-58A0A0C4DH39 117 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 OBSL1O75147 1896 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 CCL18P55774 89 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 Q8NFD4 153 aa6.82□□□□□ -1.32
SYNE1-224ENST00000478916 IGHV4OR15-8A0A075B7B6 117 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 A0A087WW49 117 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 RPL39P62891 51 aaKnown RBP6.81□□□□□ -1.32
SYNE1-224ENST00000478916 RNF138Q8WVD3 245 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 MIR7-3HGQ8N6C7 128 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 MLST8Q9BVC4 326 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 COX7BP24311 80 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 MIAQ16674 131 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 TTTY13Q9BZ97 58 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 PRORYQ9H606 182 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 TRBV7-3A0A075B6L6 115 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 IGHV7-81A0A0B4J1V7 117 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 MYCNOSP40205 109 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms