RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RBMY1BA6NDE4 496 aaKnown RBP11.11□□□□□ -0.63
HDAC6-220ENST00000477528 RBMY1EA6NEQ0 496 aaKnown RBP11.11□□□□□ -0.63
HDAC6-220ENST00000477528 CCL24O00175 119 aa11.11□□□□□ -0.63
HDAC6-220ENST00000477528 MRPS12O15235 138 aaKnown RBP11.11□□□□□ -0.63
HDAC6-220ENST00000477528 RBMY1DP0C7P1 496 aaKnown RBP11.11□□□□□ -0.63
HDAC6-220ENST00000477528 RBMY1A1P0DJD3 496 aaKnown RBP11.11□□□□□ -0.63
HDAC6-220ENST00000477528 RBMY1CP0DJD4 496 aa11.11□□□□□ -0.63
HDAC6-220ENST00000477528 TSSC4Q9Y5U2 329 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-220ENST00000477528 PRIMA1Q86XR5 153 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 C20orf173Q96LM9 149 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 ANKRD11Q6UB99 2663 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-220ENST00000477528 ATXN8Q156A1 80 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 TTC32Q5I0X7 151 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 MTURNQ8N3F0 131 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 GATD1Q8NB37 220 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 MALP21145 153 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 LINC00158P58513 81 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 MRGPRG-AS1Q2M3A8 158 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 TAX1BP3O14907 124 aa11.1□□□□□ -0.63
HDAC6-220ENST00000477528 RAI1Q7Z5J4 1906 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-220ENST00000477528 APRG1Q8IVJ8 170 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 U3KQE9 123 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 TRBV20-1A0A075B6N2 111 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 DEFB130BP0DP73 79 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 DEFB130AP0DP74 79 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 NDUFA12Q9UI09 145 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 F8W1H4 67 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 BAALCQ8WXS3 180 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 TTTY13Q9BZ97 58 aa11.09□□□□□ -0.63
HDAC6-220ENST00000477528 GAGE7O76087 117 aa11.08□□□□□ -0.64
HDAC6-220ENST00000477528 GAGE12FP0CL80 117 aa11.08□□□□□ -0.64
HDAC6-220ENST00000477528 GAGE12GP0CL81 117 aa11.08□□□□□ -0.64
HDAC6-220ENST00000477528 GAGE12IP0CL82 117 aa11.08□□□□□ -0.64
HDAC6-220ENST00000477528 CFHR3Q02985 330 aa11.08□□□□□ -0.64
HDAC6-220ENST00000477528 RNF185Q96GF1 192 aa11.08□□□□□ -0.64
HDAC6-220ENST00000477528 ODF3Q96PU9 254 aa11.08□□□□□ -0.64
HDAC6-220ENST00000477528 ZFAND2AQ8N6M9 145 aa11.07□□□□□ -0.64
HDAC6-220ENST00000477528 TIMM17AQ99595 171 aa11.07□□□□□ -0.64
HDAC6-220ENST00000477528 A0A1B0GV72 72 aa11.07□□□□□ -0.64
HDAC6-220ENST00000477528 PRO1854Q9UHT4 67 aa11.07□□□□□ -0.64
HDAC6-220ENST00000477528 TMEM243Q9BU79 118 aa11.07□□□□□ -0.64
HDAC6-220ENST00000477528 DNAJC30Q96LL9 226 aa11.06□□□□□ -0.64
HDAC6-220ENST00000477528 MDFICQ9P1T7 246 aa11.06□□□□□ -0.64
HDAC6-220ENST00000477528 TMEM86BQ8N661 226 aa11.06□□□□□ -0.64
HDAC6-220ENST00000477528 C4orf3Q8WVX3 66 aa11.06□□□□□ -0.64
HDAC6-220ENST00000477528 SPANXA1Q9NS26 97 aa11.06□□□□□ -0.64
HDAC6-220ENST00000477528 CLPSL1A2RUU4 121 aa11.06□□□□□ -0.64
HDAC6-220ENST00000477528 RPL39P62891 51 aaKnown RBP11.06□□□□□ -0.64
HDAC6-220ENST00000477528 A0A1W2PPR1 153 aa11.06□□□□□ -0.64
HDAC6-220ENST00000477528 TET2Q6N021 2002 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-220ENST00000477528 LGALS9O00182 355 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 LEPROTO15243 131 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 E9PLD3 99 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 FXYD2P54710 66 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 Q6YL49 198 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 JPT2Q9H910 190 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 K7EQG2 157 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 CRPP02741 224 aa11.05□□□□□ -0.64
HDAC6-220ENST00000477528 RNASE13Q5GAN3 156 aaKnown RBP11.05□□□□□ -0.64
HDAC6-220ENST00000477528 F8W735 103 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-220ENST00000477528 C9JAW5 83 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 RNASE1P07998 156 aaKnown RBP11.04□□□□□ -0.64
HDAC6-220ENST00000477528 HERVK_113P63121 156 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 TMEM61Q8N0U2 210 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 LRRC75A-AS1Q8N1F1 130 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 ETDBQ3ZM63 59 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 ZNF625Q96I27 306 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-220ENST00000477528 TRAV25A0A0B4J276 109 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 H3BMG7 143 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 CKS1BP61024 79 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 C2orf82Q6UX34 121 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-220ENST00000477528 TRAV8-4A0A0B4J246 113 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 IGKV2-29A2NJV5 120 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-220ENST00000477528 C6orf226Q5I0X4 101 aa11.04□□□□□ -0.64
HDAC6-220ENST00000477528 NAV2Q8IVL1 2488 aa11.03□□□□□ -0.64
HDAC6-220ENST00000477528 IGLL5B9A064 214 aa11.03□□□□□ -0.64
HDAC6-220ENST00000477528 IGHV4-31P0DP07 118 aa11.03□□□□□ -0.64
HDAC6-220ENST00000477528 A0A0J9YXV3 536 aa11.02□□□□□ -0.64
HDAC6-220ENST00000477528 SPINK8P0C7L1 97 aa11.02□□□□□ -0.64
HDAC6-220ENST00000477528 SS18Q15532 418 aa11.02□□□□□ -0.64
HDAC6-220ENST00000477528 Q8N976 141 aa11.02□□□□□ -0.64
HDAC6-220ENST00000477528 CNFNQ9BYD5 112 aa11.02□□□□□ -0.64
HDAC6-220ENST00000477528 NOP10Q9NPE3 64 aaKnown RBP11.02□□□□□ -0.64
HDAC6-220ENST00000477528 C11orf21Q9P2W6 132 aa11.02□□□□□ -0.64
HDAC6-220ENST00000477528 AMTNQ6UX39 209 aa11.02□□□□□ -0.65
HDAC6-220ENST00000477528 URB1-AS1Q96HZ7 61 aa11.02□□□□□ -0.65
HDAC6-220ENST00000477528 PAX4O43316 350 aa11.02□□□□□ -0.65
HDAC6-220ENST00000477528 LAMA3Q16787 3333 aa11.02□□□□□ -0.65
HDAC6-220ENST00000477528 C11orf86A6NJI1 115 aa11.01□□□□□ -0.65
HDAC6-220ENST00000477528 PSMB8P28062 276 aa11.01□□□□□ -0.65
HDAC6-220ENST00000477528 IGLV1-40P01703 118 aa11.01□□□□□ -0.65
HDAC6-220ENST00000477528 FGF6P10767 208 aa11.01□□□□□ -0.65
HDAC6-220ENST00000477528 TP73-AS1Q9UF72 201 aa11.01□□□□□ -0.65
HDAC6-220ENST00000477528 C11orf68Q9H3H3 251 aaKnown RBP11.01□□□□□ -0.65
HDAC6-220ENST00000477528 TSPAN13O95857 204 aa11□□□□□ -0.65
HDAC6-220ENST00000477528 GTSF1LQ9H1H1 148 aa11□□□□□ -0.65
HDAC6-220ENST00000477528 GAGE6Q13070 117 aa11□□□□□ -0.65
HDAC6-220ENST00000477528 COX8CQ7Z4L0 72 aa11□□□□□ -0.65
HDAC6-220ENST00000477528 C20orf203Q8NBC4 194 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms