RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 USP24Q9UPU5 2620 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 A0A087WTM6 91 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 TCRBV3S1A0A5B6 114 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 NCR2O95944 276 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 GUCA1AP43080 201 aaPredicted RBP0.6□□□□□ -2.31
VPS50-212ENST00000476413 RRAS2P62070 204 aaPredicted RBP0.6□□□□□ -2.31
VPS50-212ENST00000476413 S100A12P80511 92 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 COPS9Q8WXC6 57 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 DSCR8Q96T75 97 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 TSC22D3Q99576 134 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 NDUFA12Q9UI09 145 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 FHAD1B1AJZ9 1412 aa0.6□□□□□ -2.31
VPS50-212ENST00000476413 TNS1Q9HBL0 1735 aaKnown RBP0.59□□□□□ -2.31
VPS50-212ENST00000476413 MCRIP1C9JLW8 97 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 ZNF670-ZNF695F2Z2N8 137 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 PIPP12273 146 aaPredicted RBP0.59□□□□□ -2.31
VPS50-212ENST00000476413 ARPC4P59998 168 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 COPZ1P61923 177 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 SCIMPQ6UWF3 145 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 KCNRGQ8N5I3 272 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 VSTM2AQ8TAG5 236 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 TPT1P8Q9HAU6 139 aa0.59□□□□□ -2.31
VPS50-212ENST00000476413 AKAP11Q9UKA4 1901 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 LAMB1P07942 1786 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 FAM92AA1XBS5 289 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 RBAKDNA6NC62 111 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 SNCGO76070 127 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 SPCS2Q15005 226 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 FAM74A4Q5TZK3 123 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 CYP2G1PQ6ZSU1 146 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 CCDC167Q9P0B6 97 aa0.58□□□□□ -2.32
VPS50-212ENST00000476413 PHIPQ8WWQ0 1821 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 AHNAKQ09666 5890 aaKnown RBP0.57□□□□□ -2.32
VPS50-212ENST00000476413 FAM25AB3EWG3 89 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 FAM25CB3EWG5 89 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 FAM25GB3EWG6 89 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 F2Z2F3 143 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 IFNA17P01571 189 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 HMGN1P05114 100 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 SMIM6P0DI80 62 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 CCL3L1P16619 93 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 SARNPP82979 210 aaKnown RBP0.57□□□□□ -2.32
VPS50-212ENST00000476413 SPANXN1Q5VSR9 72 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 RPRMQ9NS64 109 aa0.57□□□□□ -2.32
VPS50-212ENST00000476413 SOGA1O94964 1423 aa0.56□□□□□ -2.32
VPS50-212ENST00000476413 IL5P05113 134 aa0.56□□□□□ -2.32
VPS50-212ENST00000476413 SELENOWP63302 87 aa0.56□□□□□ -2.32
VPS50-212ENST00000476413 SPTSSAQ969W0 71 aa0.56□□□□□ -2.32
VPS50-212ENST00000476413 TMEM191AQ9H0A3 160 aa0.56□□□□□ -2.32
VPS50-212ENST00000476413 SCP2D1Q9UJQ7 156 aa0.56□□□□□ -2.32
VPS50-212ENST00000476413 BDP1A6H8Y1 2624 aa0.56□□□□□ -2.32
VPS50-212ENST00000476413 TRAV12-3A0A0B4J271 114 aa0.55□□□□□ -2.32
VPS50-212ENST00000476413 NPFFO15130 113 aa0.55□□□□□ -2.32
VPS50-212ENST00000476413 RPS25P62851 125 aaKnown RBP0.55□□□□□ -2.32
VPS50-212ENST00000476413 SSBP1Q04837 148 aaKnown RBP0.55□□□□□ -2.32
VPS50-212ENST00000476413 Q6ZUT4 128 aa0.55□□□□□ -2.32
VPS50-212ENST00000476413 C4orf33Q8N1A6 199 aa0.55□□□□□ -2.32
VPS50-212ENST00000476413 FAM107BQ9H098 131 aa0.55□□□□□ -2.32
VPS50-212ENST00000476413 TMEM242Q9NWH2 141 aa0.55□□□□□ -2.32
VPS50-212ENST00000476413 NRXN2Q9P2S2 1712 aa0.55□□□□□ -2.32
VPS50-212ENST00000476413 CACNA1EQ15878 2313 aa0.54□□□□□ -2.32
VPS50-212ENST00000476413 NDUFB6O95139 128 aa0.54□□□□□ -2.32
VPS50-212ENST00000476413 PIRTP0C851 137 aa0.54□□□□□ -2.32
VPS50-212ENST00000476413 NAIPQ13075 1403 aa0.54□□□□□ -2.32
VPS50-212ENST00000476413 SLC48A1Q6P1K1 146 aa0.53□□□□□ -2.32
VPS50-212ENST00000476413 C20orf197Q8N268 126 aa0.53□□□□□ -2.32
VPS50-212ENST00000476413 C1orf54Q8WWF1 131 aa0.53□□□□□ -2.32
VPS50-212ENST00000476413 ARL11Q969Q4 196 aa0.53□□□□□ -2.32
VPS50-212ENST00000476413 PRR15LQ9BU68 103 aa0.53□□□□□ -2.32
VPS50-212ENST00000476413 RERGLQ9H628 205 aa0.53□□□□□ -2.32
VPS50-212ENST00000476413 V9GYV3 84 aa0.53□□□□□ -2.32
VPS50-212ENST00000476413 JMJD1CQ15652 2540 aa0.52□□□□□ -2.33
VPS50-212ENST00000476413 APODP05090 189 aa0.52□□□□□ -2.33
VPS50-212ENST00000476413 CBLN1P23435 193 aa0.52□□□□□ -2.33
VPS50-212ENST00000476413 C9orf116Q5BN46 136 aaPredicted RBP0.52□□□□□ -2.33
VPS50-212ENST00000476413 COX7B2Q8TF08 81 aa0.52□□□□□ -2.33
VPS50-212ENST00000476413 PDCD10Q9BUL8 212 aa0.52□□□□□ -2.33
VPS50-212ENST00000476413 F5P12259 2224 aa0.52□□□□□ -2.33
VPS50-212ENST00000476413 TRBV7-1A0A0A6YYK4 115 aa0.51□□□□□ -2.33
VPS50-212ENST00000476413 KDM6BO15054 1643 aa0.51□□□□□ -2.33
VPS50-212ENST00000476413 UBE2G1P62253 170 aa0.51□□□□□ -2.33
VPS50-212ENST00000476413 KIAA0100Q14667 2235 aaKnown RBP0.51□□□□□ -2.33
VPS50-212ENST00000476413 PARP14Q460N5 1801 aa0.51□□□□□ -2.33
VPS50-212ENST00000476413 AQP10Q96PS8 301 aa0.51□□□□□ -2.33
VPS50-212ENST00000476413 SEC11CQ9BY50 192 aa0.51□□□□□ -2.33
VPS50-212ENST00000476413 BPESC1Q9GZL8 116 aa0.51□□□□□ -2.33
VPS50-212ENST00000476413 DAPK1P53355 1430 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 TMEM2Q9UHN6 1383 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 EFCAB10A6NFE3 127 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 C12orf73Q69YU5 71 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 SPTSSBQ8NFR3 76 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 Q96NJ1 140 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 SDF2Q99470 211 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 SPANXDQ9BXN6 97 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 NAA60Q9H7X0 242 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 PROK2Q9HC23 129 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 ARFGEF1Q9Y6D6 1849 aa0.5□□□□□ -2.33
VPS50-212ENST00000476413 GVQW2A0A096LPI5 108 aaPredicted RBP0.49□□□□□ -2.33
VPS50-212ENST00000476413 APOC4-APOC2K7ER74 178 aa0.49□□□□□ -2.33
VPS50-212ENST00000476413 IFNGP01579 166 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms