RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SCRT2Q9NQ03 307 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 ESM1Q9NQ30 184 aa3.84□□□□□ -1.8
CCDC39-204ENST00000476379 IGHV2-70DA0A0C4DH43 119 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 FAM231DQ6ZW35 169 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 PIP4P2Q8N4L2 257 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 MAPKAPK5-AS1Q8N8E1 139 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 ZNF48Q96MX3 618 aaPredicted RBP3.83□□□□□ -1.8
CCDC39-204ENST00000476379 LINC01587Q99440 93 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 C11orf21Q9P2W6 132 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 ESDP10768 282 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 GAGE13Q4V321 117 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 CLPSL2Q6UWE3 100 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 APRG1Q8IVJ8 170 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 DEFB125Q8N687 156 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 ZNF492Q9P255 531 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 HOXA3O43365 443 aaPredicted RBP3.83□□□□□ -1.8
CCDC39-204ENST00000476379 IGHV4-59P01825 116 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 FGF6P10767 208 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 RPL35AP18077 110 aaKnown RBP3.83□□□□□ -1.8
CCDC39-204ENST00000476379 HERVK_113P61574 105 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 MS4A6AQ9H2W1 248 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 TRBV20-1A0A075B6N2 111 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 C19orf71A6NCJ1 209 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 C9JAW5 83 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 IGLV2-11P01706 119 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 CD28P10747 220 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 AZU1P20160 251 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 DEFB131AP59861 70 aa3.83□□□□□ -1.8
CCDC39-204ENST00000476379 RBAKDNA6NC62 111 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 ATP5LO75964 103 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 RBX1P62877 108 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 OR13C6PQ8NH95 151 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 GEMIN7Q9H840 131 aaKnown RBP3.82□□□□□ -1.8
CCDC39-204ENST00000476379 A0A1B0GXF2 115 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 A0A1W2PPM0 123 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 SDHAF1A6NFY7 115 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 C9orf118A6NHY6 69 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 PROK1P58294 105 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 PRR9Q5T870 116 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 SYT8Q8NBV8 401 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 MLST8Q9BVC4 326 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 NXT2Q9NPJ8 142 aaKnown RBP3.82□□□□□ -1.8
CCDC39-204ENST00000476379 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.82□□□□□ -1.8
CCDC39-204ENST00000476379 TRAV21A0A0B4J279 112 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 IGKV2-29A2NJV5 120 aaPredicted RBP3.82□□□□□ -1.8
CCDC39-204ENST00000476379 TMEM262E9PQX1 116 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 RPS20P60866 119 aaKnown RBP3.82□□□□□ -1.8
CCDC39-204ENST00000476379 Q8N9W7 124 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 SEC11AP67812 179 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 ZFP2Q6ZN57 461 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 PLEKHB2Q96CS7 222 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 C20orf78Q9BR46 151 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 MDFICQ9P1T7 246 aa3.82□□□□□ -1.8
CCDC39-204ENST00000476379 IGLV11-55A0A075B6I3 123 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 TRAV8-3A0A0A6YYJ7 113 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 A4D1N5 150 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 BUB3O43684 328 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 VPREB1P12018 145 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 ODF1Q14990 250 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 LINC01545Q5VT33 79 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 OR5A1Q8NGJ0 315 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 TNFRSF18Q9Y5U5 241 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 SMAD5-AS1Q9Y6J3 95 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 SNRPD3P62318 126 aaKnown RBP3.81□□□□□ -1.8
CCDC39-204ENST00000476379 GAGE1Q13065 139 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 C2orf91Q6ZV80 131 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 C20orf173Q96LM9 149 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 CCDC140Q96MF4 163 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 TRGV1A0A0A0MS02 117 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 SPINK8P0C7L1 97 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 ID1P41134 155 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 KLF5Q13887 457 aaPredicted RBP3.81□□□□□ -1.8
CCDC39-204ENST00000476379 NSUN5P1Q3KNT7 163 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 Q6AWC8 147 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 ZNF580Q9UK33 172 aa3.81□□□□□ -1.8
CCDC39-204ENST00000476379 A0A0J9YXV3 536 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 CENPVL3A0A0U1RRI6 287 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 K7EP34 96 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 ITGB1BP1O14713 200 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 PPP1R17O96001 155 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 AVPP01185 164 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 HOXD3P31249 432 aaPredicted RBP3.8□□□□□ -1.8
CCDC39-204ENST00000476379 C12orf74Q32Q52 190 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 TTC32Q5I0X7 151 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 RASL11AQ6T310 242 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 TRPT1Q86TN4 253 aaKnown RBP3.8□□□□□ -1.8
CCDC39-204ENST00000476379 AJUBAQ96IF1 538 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 SIGMAR1Q99720 223 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 PRSS22Q9GZN4 317 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 TGP01266 2768 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 SLURP1P55000 103 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 CKS1BP61024 79 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 Q6ZSV7 163 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 SLC50A1Q9BRV3 221 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 DEFB130BP0DP73 79 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 DEFB130AP0DP74 79 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 SMIM2Q9BVW6 85 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 DPH3P1Q9H4G8 78 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 MOB4Q9Y3A3 225 aa3.8□□□□□ -1.8
CCDC39-204ENST00000476379 TRGV2A0A075B6R0 118 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms