RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 MARVELD1Q9BSK0 173 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 KRTAP4-7Q9BYR0 210 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 ACTR3CQ9C0K3 210 aaPredicted RBP2.89□□□□□ -1.95
USP4-209ENST00000475873 C20orf85Q9H1P6 137 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 PPDPFQ9H3Y8 114 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 MAP1LC3AQ9H492 121 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 Q9UF83 564 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 KLK12Q9UKR0 248 aa2.89□□□□□ -1.95
USP4-209ENST00000475873 C7orf71A4D174 169 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 MAP1LC3B2A6NCE7 125 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 MEIS3P1A6NDR6 274 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 SNRPGP15A8MWD9 76 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 GGTLC3B5MD39 225 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 H3BRN7 92 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 PDCD5O14737 125 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 CCL25O15444 150 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 GHRHP01286 108 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 SULT1A3P0DMM9 295 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 SULT1A4P0DMN0 295 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 RPL13AP40429 203 aaKnown RBP2.88□□□□□ -1.95
USP4-209ENST00000475873 TMBIM6P55061 237 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 TAS2R30P59541 319 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 S100A10P60903 97 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 FABP5Q01469 135 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 ZNF266Q14584 549 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 PEA15Q15121 130 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 C14orf177Q52M58 125 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 KRTAP26-1Q6PEX3 210 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 SH2D6Q7Z4S9 175 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 C15orf54Q8N8G6 183 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 SLC25A29Q8N8R3 303 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 OR5AP2Q8NGF4 316 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 RASL10AQ92737 203 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 UBE2WQ96B02 151 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 FAM19A4Q96LR4 140 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 SGK494Q96LW2 274 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 GPR82Q96P67 336 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 ODF3Q96PU9 254 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 KRTAP4-12Q9BQ66 201 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 SMIM3Q9BZL3 60 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 MAP1LC3BQ9GZQ8 125 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 GTSF1LQ9H1H1 148 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 ZNF331Q9NQX6 463 aaPredicted RBP2.88□□□□□ -1.95
USP4-209ENST00000475873 SPANXB1Q9NS25 103 aaPredicted RBP2.88□□□□□ -1.95
USP4-209ENST00000475873 EHFQ9NZC4 300 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 TNFSF18Q9UNG2 199 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 ORC6Q9Y5N6 252 aa2.88□□□□□ -1.95
USP4-209ENST00000475873 IGHV1OR15-1A0A075B7D0 117 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 TRAV4A0A0B4J268 109 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 ANKRD20A5PA0PJZ0 165 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 IRGMA1A4Y4 181 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 H3BTX0 84 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 J3KT08 172 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 MYL12BO14950 172 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 PMP2P02689 132 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 KRTAP1-4P0C5Y4 121 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 LINC00694P0DN24 101 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 RPL12P30050 165 aaKnown RBP2.87□□□□□ -1.95
USP4-209ENST00000475873 AMTP48728 403 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 NCS1P62166 190 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 CACNG7P62955 275 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 SMAGPQ0VAQ4 97 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 PPP1R1AQ13522 171 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 TMEM78Q5T7P6 136 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 ENHOQ6UWT2 76 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 ZNF664Q8N3J9 261 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 RMI2Q96E14 147 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 TRGV9Q99603 122 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 PSMG3Q9BT73 122 aaPredicted RBP2.87□□□□□ -1.95
USP4-209ENST00000475873 SHANK2-AS3Q9BTD1 123 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 TMEM222Q9H0R3 208 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 PRR13Q9NZ81 148 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 PRO0628Q9UI54 55 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 ERG28Q9UKR5 140 aa2.87□□□□□ -1.95
USP4-209ENST00000475873 LSM5Q9Y4Y9 91 aaKnown RBP2.87□□□□□ -1.95
USP4-209ENST00000475873 PMS2P5A8MQ11 134 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 INMT-MINDY4F8WBC2 141 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 TAAR5O14804 337 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 MPDU1O75352 247 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 ARL6IP5O75915 188 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 ATP5LO75964 103 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 SLC25A5P05141 298 aaKnown RBP2.86□□□□□ -1.95
USP4-209ENST00000475873 PFN1P07737 140 aaKnown RBP2.86□□□□□ -1.95
USP4-209ENST00000475873 ESDP10768 282 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 ORM2P19652 201 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 LEPP41159 167 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 AKR1C2P52895 323 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 EIF5AP63241 154 aaKnown RBP2.86□□□□□ -1.95
USP4-209ENST00000475873 ERCC8Q13216 396 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 OPCMLQ14982 345 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 BATFQ16520 125 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 GTF2H5Q6ZYL4 71 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 FAM19A5Q7Z5A7 132 aaPredicted RBP2.86□□□□□ -1.95
USP4-209ENST00000475873 CBLN2Q8IUK8 224 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 ZFAND2AQ8N6M9 145 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 Q8TAT8 98 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 SLC25A38Q96DW6 304 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 DPH3Q96FX2 82 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 DIRAS2Q96HU8 199 aa2.86□□□□□ -1.95
USP4-209ENST00000475873 TMEM126AQ9H061 195 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms