RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 LGALS9CQ6DKI2 356 aa8.99□□□□□ -0.97
SYNE1-222ENST00000474655 IFI27L1Q96BM0 104 aa8.99□□□□□ -0.97
SYNE1-222ENST00000474655 NSD1Q96L73 2696 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-222ENST00000474655 FOSL1P15407 271 aa8.98□□□□□ -0.97
SYNE1-222ENST00000474655 FXYD7P58549 80 aa8.98□□□□□ -0.97
SYNE1-222ENST00000474655 LAGE3Q14657 143 aa8.98□□□□□ -0.97
SYNE1-222ENST00000474655 SYT8Q8NBV8 401 aa8.98□□□□□ -0.97
SYNE1-222ENST00000474655 UQCR10Q9UDW1 63 aa8.98□□□□□ -0.97
SYNE1-222ENST00000474655 SMIM17P0DL12 118 aa8.97□□□□□ -0.97
SYNE1-222ENST00000474655 TMEM158Q8WZ71 300 aa8.97□□□□□ -0.97
SYNE1-222ENST00000474655 FAM110AQ9BQ89 295 aa8.97□□□□□ -0.97
SYNE1-222ENST00000474655 JPT2Q9H910 190 aa8.97□□□□□ -0.97
SYNE1-222ENST00000474655 ST20Q9HBF5 79 aa8.97□□□□□ -0.97
SYNE1-222ENST00000474655 MGPP08493 103 aa8.96□□□□□ -0.97
SYNE1-222ENST00000474655 PIK3CD-AS1Q5SR53 167 aa8.96□□□□□ -0.97
SYNE1-222ENST00000474655 RPL39LQ96EH5 51 aaKnown RBP8.96□□□□□ -0.97
SYNE1-222ENST00000474655 IGLV1-51P01701 117 aa8.96□□□□□ -0.98
SYNE1-222ENST00000474655 CRYGDP07320 174 aa8.96□□□□□ -0.98
SYNE1-222ENST00000474655 CMC4P56277 68 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-222ENST00000474655 NDUFA11Q86Y39 141 aa8.96□□□□□ -0.98
SYNE1-222ENST00000474655 PTH2Q96A98 100 aa8.96□□□□□ -0.98
SYNE1-222ENST00000474655 MCRIP2Q9BUT9 160 aaKnown RBP8.96□□□□□ -0.98
SYNE1-222ENST00000474655 CBY3A6NI87 242 aa8.95□□□□□ -0.98
SYNE1-222ENST00000474655 ORMDL2Q53FV1 153 aa8.95□□□□□ -0.98
SYNE1-222ENST00000474655 TRBV6-5A0A0K0K1A5 114 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 hDV102S1A0JD36 115 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 OR11H12B2RN74 326 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 INAFM1C9JVW0 142 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 H0Y8G0 127 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 TCAPO15273 167 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 POLR2KP53803 58 aaKnown RBP8.94□□□□□ -0.98
SYNE1-222ENST00000474655 KRTAP10-3P60369 221 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 SUMO4Q6EEV6 95 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 TRPT1Q86TN4 253 aaKnown RBP8.94□□□□□ -0.98
SYNE1-222ENST00000474655 C2orf88Q9BSF0 95 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 SNHG12Q9BXW3 62 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 HIVEP1P15822 2718 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 A0A087WWL8 130 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 HSBP1L1C9JCN9 74 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 ATP5LO75964 103 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 ZNF876PQ49A33 203 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 ZMAT4Q9H898 229 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 EDA2RQ9HAV5 297 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 GOLT1BQ9Y3E0 138 aa8.94□□□□□ -0.98
SYNE1-222ENST00000474655 NACAE9PAV3 2078 aa8.93□□□□□ -0.98
SYNE1-222ENST00000474655 M0R143 59 aa8.93□□□□□ -0.98
SYNE1-222ENST00000474655 SAP30O75446 220 aa8.93□□□□□ -0.98
SYNE1-222ENST00000474655 INSP01308 110 aa8.93□□□□□ -0.98
SYNE1-222ENST00000474655 BEAN1Q3B7T3 259 aa8.93□□□□□ -0.98
SYNE1-222ENST00000474655 STHQ8IWL8 128 aa8.93□□□□□ -0.98
SYNE1-222ENST00000474655 PMCHL2Q9BQD1 86 aa8.93□□□□□ -0.98
SYNE1-222ENST00000474655 M0QY20 66 aa8.92□□□□□ -0.98
SYNE1-222ENST00000474655 EREGO14944 169 aa8.92□□□□□ -0.98
SYNE1-222ENST00000474655 ODF1Q14990 250 aa8.92□□□□□ -0.98
SYNE1-222ENST00000474655 NSUN5P1Q3KNT7 163 aa8.92□□□□□ -0.98
SYNE1-222ENST00000474655 C11orf72Q8NBR9 251 aa8.92□□□□□ -0.98
SYNE1-222ENST00000474655 TOMM6Q96B49 74 aa8.92□□□□□ -0.98
SYNE1-222ENST00000474655 C18orf15Q96N68 181 aa8.92□□□□□ -0.98
SYNE1-222ENST00000474655 MRPS16Q9Y3D3 137 aaKnown RBP8.92□□□□□ -0.98
SYNE1-222ENST00000474655 FN1P02751 2386 aaKnown RBP8.92□□□□□ -0.98
SYNE1-222ENST00000474655 NIPBLQ6KC79 2804 aaeCLIP8.92□□□□□ -0.98
SYNE1-222ENST00000474655 TRBV27A0A0K0K1C4 114 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 M0R2P5 195 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 NUDT3O95989 172 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 ZNF415Q09FC8 603 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 Q6ZN92 141 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 CSTL1Q9H114 145 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 C19orf73Q9NVV2 129 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 C2CD3Q4AC94 2353 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 LINC01549A6NIU2 74 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 UFSP1Q6NVU6 142 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 MORN3Q6PF18 240 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-222ENST00000474655 SPXQ9BT56 116 aa8.91□□□□□ -0.98
SYNE1-222ENST00000474655 F5H697 171 aa8.9□□□□□ -0.98
SYNE1-222ENST00000474655 VCYO14598 125 aa8.9□□□□□ -0.98
SYNE1-222ENST00000474655 CRLF1O75462 422 aa8.9□□□□□ -0.98
SYNE1-222ENST00000474655 G0S2P27469 103 aa8.9□□□□□ -0.98
SYNE1-222ENST00000474655 HNRNPA3P51991 378 aaKnown RBP8.9□□□□□ -0.98
SYNE1-222ENST00000474655 NUTF2P61970 127 aaKnown RBP8.9□□□□□ -0.98
SYNE1-222ENST00000474655 FAM74A4Q5TZK3 123 aa8.9□□□□□ -0.98
SYNE1-222ENST00000474655 LINC01587Q99440 93 aa8.9□□□□□ -0.98
SYNE1-222ENST00000474655 DKK2Q9UBU2 259 aa8.9□□□□□ -0.98
SYNE1-222ENST00000474655 A8MWV9 139 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 PRSS1P07477 247 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 C1orf158Q8N1D5 194 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 LINC00482Q8N8I6 264 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 TRAV12-1A0A0B4J245 112 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 SDHAF1A6NFY7 115 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-222ENST00000474655 PRM2P04554 102 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 COX8AP10176 69 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 HTN1P15515 57 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 ZNF56Q15929 161 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 SLC25A34Q6PIV7 304 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 XCL2Q9UBD3 114 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 HHLA3Q9XRX5 114 aa8.89□□□□□ -0.99
SYNE1-222ENST00000474655 C2orf66Q6UXQ4 117 aa8.88□□□□□ -0.99
SYNE1-222ENST00000474655 IL17DQ8TAD2 202 aa8.88□□□□□ -0.99
SYNE1-222ENST00000474655 KIR2DL4Q99706 377 aa8.88□□□□□ -0.99
SYNE1-222ENST00000474655 A0A087WX48 190 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms