RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 GRIFINA4D1Z8 144 aa13.59□□□□□ -0.23
PDLIM4-206ENST00000474421 UMAD1C9J7I0 102 aa13.59□□□□□ -0.23
PDLIM4-206ENST00000474421 S100A9P06702 114 aaKnown RBP13.59□□□□□ -0.23
PDLIM4-206ENST00000474421 FAM74A4Q5TZK3 123 aa13.59□□□□□ -0.23
PDLIM4-206ENST00000474421 ZFP82Q8N141 532 aa13.59□□□□□ -0.23
PDLIM4-206ENST00000474421 KCNRGQ8N5I3 272 aa13.59□□□□□ -0.23
PDLIM4-206ENST00000474421 SFRP2Q96HF1 295 aa13.59□□□□□ -0.23
PDLIM4-206ENST00000474421 SEC11BP0C7V7 166 aa13.58□□□□□ -0.24
PDLIM4-206ENST00000474421 TMEM70Q9BUB7 260 aa13.58□□□□□ -0.24
PDLIM4-206ENST00000474421 M0R381 172 aa13.57□□□□□ -0.24
PDLIM4-206ENST00000474421 PAGE4O60829 102 aa13.57□□□□□ -0.24
PDLIM4-206ENST00000474421 SFT2D1Q8WV19 159 aa13.57□□□□□ -0.24
PDLIM4-206ENST00000474421 MBD3L1Q8WWY6 194 aa13.57□□□□□ -0.24
PDLIM4-206ENST00000474421 URGCP-MRPS24S4R325 110 aa13.57□□□□□ -0.24
PDLIM4-206ENST00000474421 FAT1Q14517 4588 aa13.57□□□□□ -0.24
PDLIM4-206ENST00000474421 TMSB15BA0A087X1C1 80 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 A0A0D9SG52 128 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 TRBV10-1A0A0K0K1A3 114 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 HMSDA8MTL9 139 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 SMLR1H3BR10 107 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 Q5VSD8 79 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 FAM213BQ8TBF2 198 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 Q9UF83 564 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 COX11Q9Y6N1 276 aa13.56□□□□□ -0.24
PDLIM4-206ENST00000474421 A0A087WWL8 130 aa13.55□□□□□ -0.24
PDLIM4-206ENST00000474421 PFDN1O60925 122 aa13.55□□□□□ -0.24
PDLIM4-206ENST00000474421 KANTRA0A1W2PQU2 76 aa13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 INAFM2P0DMQ5 153 aa13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 EIF5AP63241 154 aaKnown RBP13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 DAZ4Q86SG3 579 aaKnown RBP13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 Q8N3U1 123 aa13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 RMI2Q96E14 147 aa13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 ZNF471Q9BX82 626 aaPredicted RBP13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 DAZ3Q9NR90 486 aaKnown RBP13.54□□□□□ -0.24
PDLIM4-206ENST00000474421 CXCL1P09341 107 aa13.53□□□□□ -0.24
PDLIM4-206ENST00000474421 RPL36AP83881 106 aaKnown RBP13.53□□□□□ -0.24
PDLIM4-206ENST00000474421 RPL36ALQ969Q0 106 aaKnown RBP13.53□□□□□ -0.24
PDLIM4-206ENST00000474421 BCL2L11O43521 198 aa13.52□□□□□ -0.25
PDLIM4-206ENST00000474421 C1QBP02746 253 aa13.52□□□□□ -0.25
PDLIM4-206ENST00000474421 KCNIP4Q6PIL6 250 aa13.52□□□□□ -0.25
PDLIM4-206ENST00000474421 CHCHD7Q9BUK0 85 aa13.52□□□□□ -0.25
PDLIM4-206ENST00000474421 VPS13BQ7Z7G8 4022 aa13.52□□□□□ -0.25
PDLIM4-206ENST00000474421 TRBV7-3A0A075B6L6 115 aa13.51□□□□□ -0.25
PDLIM4-206ENST00000474421 FAM229AH3BQW9 127 aa13.51□□□□□ -0.25
PDLIM4-206ENST00000474421 H2AFB1P0C5Y9 115 aa13.51□□□□□ -0.25
PDLIM4-206ENST00000474421 ELOBQ15370 118 aa13.51□□□□□ -0.25
PDLIM4-206ENST00000474421 NIT1Q86X76 327 aa13.51□□□□□ -0.25
PDLIM4-206ENST00000474421 BAGE2Q86Y30 109 aa13.51□□□□□ -0.25
PDLIM4-206ENST00000474421 A0A1B0GV50 99 aa13.5□□□□□ -0.25
PDLIM4-206ENST00000474421 SCO2A0A1W2PP80 73 aa13.5□□□□□ -0.25
PDLIM4-206ENST00000474421 SMR3BP02814 79 aaPredicted RBP13.5□□□□□ -0.25
PDLIM4-206ENST00000474421 RAB4BP61018 213 aa13.5□□□□□ -0.25
PDLIM4-206ENST00000474421 MLST8Q9BVC4 326 aa13.5□□□□□ -0.25
PDLIM4-206ENST00000474421 A0A087WX48 190 aa13.49□□□□□ -0.25
PDLIM4-206ENST00000474421 UBE2D3P61077 147 aa13.49□□□□□ -0.25
PDLIM4-206ENST00000474421 UBE2D2P62837 147 aa13.49□□□□□ -0.25
PDLIM4-206ENST00000474421 OR10G8Q8NGN5 311 aa13.48□□□□□ -0.25
PDLIM4-206ENST00000474421 WFDC2Q14508 124 aa13.47□□□□□ -0.25
PDLIM4-206ENST00000474421 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.47□□□□□ -0.25
PDLIM4-206ENST00000474421 KLK12Q9UKR0 248 aa13.47□□□□□ -0.25
PDLIM4-206ENST00000474421 DNAH8Q96JB1 4490 aa13.47□□□□□ -0.25
PDLIM4-206ENST00000474421 SNAI2O43623 268 aa13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 OR5AL1P0C617 328 aa13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 RPL19P84098 196 aaKnown RBP13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 ZNF56Q15929 161 aa13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 TMUB2Q71RG4 321 aa13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 OR10AG1Q8NH19 301 aa13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 SSBP4Q9BWG4 385 aaPredicted RBP13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 MANBALQ9NQG1 85 aa13.46□□□□□ -0.25
PDLIM4-206ENST00000474421 IGKV2D-24A0A075B6R9 120 aa13.45□□□□□ -0.26
PDLIM4-206ENST00000474421 LECT2O14960 151 aa13.45□□□□□ -0.26
PDLIM4-206ENST00000474421 HAMPP81172 84 aa13.45□□□□□ -0.26
PDLIM4-206ENST00000474421 SPANXN1Q5VSR9 72 aa13.45□□□□□ -0.26
PDLIM4-206ENST00000474421 PRR27Q6MZM9 219 aa13.45□□□□□ -0.26
PDLIM4-206ENST00000474421 Q8N976 141 aa13.45□□□□□ -0.26
PDLIM4-206ENST00000474421 RPL35P42766 123 aaKnown RBP13.44□□□□□ -0.26
PDLIM4-206ENST00000474421 Q0VG73 95 aa13.44□□□□□ -0.26
PDLIM4-206ENST00000474421 BAALCQ8WXS3 180 aa13.44□□□□□ -0.26
PDLIM4-206ENST00000474421 UBE2WQ96B02 151 aa13.44□□□□□ -0.26
PDLIM4-206ENST00000474421 SRRM2Q9UQ35 2752 aaKnown RBP13.44□□□□□ -0.26
PDLIM4-206ENST00000474421 TRBV6-8A0A0A6YYG3 113 aa13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 TMEM262E9PQX1 116 aa13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 TEX46H3BTG2 121 aa13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 RAB5CP51148 216 aa13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 PKIAP61925 76 aa13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 EIF5AL1Q6IS14 154 aaKnown RBP13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 FAM30AQ9NZY2 134 aa13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 DMBT1Q9UGM3 2413 aaPredicted RBP13.43□□□□□ -0.26
PDLIM4-206ENST00000474421 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.42□□□□□ -0.26
PDLIM4-206ENST00000474421 TRAV1-1A0A0B4J248 108 aa13.42□□□□□ -0.26
PDLIM4-206ENST00000474421 F5H697 171 aa13.42□□□□□ -0.26
PDLIM4-206ENST00000474421 SMIM17P0DL12 118 aa13.42□□□□□ -0.26
PDLIM4-206ENST00000474421 NEXN-AS1Q8NBZ9 246 aa13.42□□□□□ -0.26
PDLIM4-206ENST00000474421 C11orf52Q96A22 123 aa13.42□□□□□ -0.26
PDLIM4-206ENST00000474421 GNG13Q9P2W3 67 aa13.42□□□□□ -0.26
PDLIM4-206ENST00000474421 RBFOX3A6NFN3 312 aa13.41□□□□□ -0.26
PDLIM4-206ENST00000474421 TMEM97Q5BJF2 176 aa13.41□□□□□ -0.26
PDLIM4-206ENST00000474421 ATRAIDQ6UW56 229 aa13.41□□□□□ -0.26
PDLIM4-206ENST00000474421 Q6ZSA8 131 aa13.41□□□□□ -0.26
PDLIM4-206ENST00000474421 AP1S3Q96PC3 154 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms