RNA–Protein interactions for RNA: ENST00000469744.1

MRPL28-208, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 1 (best)

Gene MRPL28, Length 1,467 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-208ENST00000469744 VAMP8Q9BV40 100 aa12.79□□□□□ -0.36
MRPL28-208ENST00000469744 AP5S1Q9NUS5 200 aa12.79□□□□□ -0.36
MRPL28-208ENST00000469744 KNCNA6PVL3 124 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 KLLNB2CW77 178 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 CRXO43186 299 aaPredicted RBP12.78□□□□□ -0.36
MRPL28-208ENST00000469744 CKS2P33552 79 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 SNRPD3P62318 126 aaKnown RBP12.78□□□□□ -0.36
MRPL28-208ENST00000469744 EBLN2Q6P2I7 272 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 STHQ8IWL8 128 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 NDUFAF3Q9BU61 184 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 HSPB8Q9UJY1 196 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 LEPROTL1O95214 131 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 TMEM70Q9BUB7 260 aa12.78□□□□□ -0.36
MRPL28-208ENST00000469744 LEPP41159 167 aa12.77□□□□□ -0.37
MRPL28-208ENST00000469744 MSRB1Q9NZV6 116 aa12.77□□□□□ -0.37
MRPL28-208ENST00000469744 MUC21A0A0G2JKD1 596 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 MUC21A0A140T8X8 626 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 LINC01546A6NGU7 62 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 F6UB75 175 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 DUSP14O95147 198 aaKnown RBP12.76□□□□□ -0.37
MRPL28-208ENST00000469744 PSMG4Q5JS54 123 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 MUC21Q5SSG8 566 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 OR11H2Q8NH07 326 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 OR10AG1Q8NH19 301 aa12.76□□□□□ -0.37
MRPL28-208ENST00000469744 A0A0J9YX75 114 aa12.75□□□□□ -0.37
MRPL28-208ENST00000469744 C20orf202A1L168 122 aa12.75□□□□□ -0.37
MRPL28-208ENST00000469744 RNASE4P34096 147 aaKnown RBP12.75□□□□□ -0.37
MRPL28-208ENST00000469744 ASIPP42127 132 aa12.75□□□□□ -0.37
MRPL28-208ENST00000469744 TRPT1Q86TN4 253 aaKnown RBP12.75□□□□□ -0.37
MRPL28-208ENST00000469744 C14orf144Q96I85 54 aa12.75□□□□□ -0.37
MRPL28-208ENST00000469744 SCRT2Q9NQ03 307 aa12.75□□□□□ -0.37
MRPL28-208ENST00000469744 PRSS47A8MTI9 375 aa12.74□□□□□ -0.37
MRPL28-208ENST00000469744 DEFB4AO15263 64 aa12.74□□□□□ -0.37
MRPL28-208ENST00000469744 GIG44P09565 113 aaPredicted RBP12.74□□□□□ -0.37
MRPL28-208ENST00000469744 IFI27P40305 119 aaPredicted RBP12.74□□□□□ -0.37
MRPL28-208ENST00000469744 SSTP61278 116 aa12.74□□□□□ -0.37
MRPL28-208ENST00000469744 SPANXN1Q5VSR9 72 aa12.74□□□□□ -0.37
MRPL28-208ENST00000469744 PET117Q6UWS5 81 aa12.74□□□□□ -0.37
MRPL28-208ENST00000469744 MAP1LC3AQ9H492 121 aa12.74□□□□□ -0.37
MRPL28-208ENST00000469744 SYS1-DBNDD2H3BUS1 97 aa12.73□□□□□ -0.37
MRPL28-208ENST00000469744 NPYP01303 97 aa12.73□□□□□ -0.37
MRPL28-208ENST00000469744 DEFB1P60022 68 aa12.73□□□□□ -0.37
MRPL28-208ENST00000469744 ANXA2RQ3ZCQ2 193 aa12.73□□□□□ -0.37
MRPL28-208ENST00000469744 MAP1LC3CQ9BXW4 147 aa12.73□□□□□ -0.37
MRPL28-208ENST00000469744 H3BVH4 76 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 TSPOP30536 169 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 TDRG1Q3Y452 100 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 FOXI2Q6ZQN5 318 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 Q6ZQT7 251 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 SPATA12Q7Z6I5 190 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 MRAP2Q96G30 205 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 MIEN1Q9BRT3 115 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 NXT2Q9NPJ8 142 aaKnown RBP12.72□□□□□ -0.37
MRPL28-208ENST00000469744 DNAH1Q9P2D7 4330 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 S100A4P26447 101 aaKnown RBP12.72□□□□□ -0.37
MRPL28-208ENST00000469744 MRPL52Q86TS9 123 aaKnown RBP12.72□□□□□ -0.37
MRPL28-208ENST00000469744 PAM16Q9Y3D7 125 aa12.72□□□□□ -0.37
MRPL28-208ENST00000469744 PLECQ15149 4684 aaKnown RBP12.71□□□□□ -0.37
MRPL28-208ENST00000469744 C7orf71A4D174 169 aa12.71□□□□□ -0.38
MRPL28-208ENST00000469744 NUPR2A6NF83 97 aa12.71□□□□□ -0.38
MRPL28-208ENST00000469744 NXPH4O95158 308 aa12.71□□□□□ -0.38
MRPL28-208ENST00000469744 TNFRSF6BO95407 300 aa12.71□□□□□ -0.38
MRPL28-208ENST00000469744 LBHQ53QV2 105 aaPredicted RBP12.71□□□□□ -0.38
MRPL28-208ENST00000469744 TRAV9-2A0A087WT02 112 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 LOC389332A0A1B0GUA5 103 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 A8MTW9 85 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 SMKR1H3BMG3 65 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 J3KRW8 73 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 EVI2AP22794 236 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 NANOS2P60321 138 aaKnown RBP12.7□□□□□ -0.38
MRPL28-208ENST00000469744 SPATA45Q537H7 98 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 CEMP1Q6PRD7 247 aaPredicted RBP12.7□□□□□ -0.38
MRPL28-208ENST00000469744 ALMS1Q8TCU4 4167 aa12.7□□□□□ -0.38
MRPL28-208ENST00000469744 MORN3Q6PF18 240 aaPredicted RBP12.69□□□□□ -0.38
MRPL28-208ENST00000469744 FAM159AQ6UWV7 190 aa12.69□□□□□ -0.38
MRPL28-208ENST00000469744 LINC00173Q6ZV60 143 aa12.69□□□□□ -0.38
MRPL28-208ENST00000469744 C11orf68Q9H3H3 251 aaKnown RBP12.69□□□□□ -0.38
MRPL28-208ENST00000469744 PHLDA3Q9Y5J5 127 aa12.69□□□□□ -0.38
MRPL28-208ENST00000469744 HYDINQ4G0P3 5121 aa12.69□□□□□ -0.38
MRPL28-208ENST00000469744 NCR2O95944 276 aa12.68□□□□□ -0.38
MRPL28-208ENST00000469744 HBDP02042 147 aa12.68□□□□□ -0.38
MRPL28-208ENST00000469744 RNASE3P12724 160 aaKnown RBP12.68□□□□□ -0.38
MRPL28-208ENST00000469744 Q8N8P6 123 aa12.68□□□□□ -0.38
MRPL28-208ENST00000469744 PHLDA1Q8WV24 401 aaPredicted RBP12.68□□□□□ -0.38
MRPL28-208ENST00000469744 A0A096LNJ9 63 aa12.67□□□□□ -0.38
MRPL28-208ENST00000469744 POM121L12Q8N7R1 296 aa12.67□□□□□ -0.38
MRPL28-208ENST00000469744 NRACQ8N912 160 aa12.67□□□□□ -0.38
MRPL28-208ENST00000469744 Q8NAQ8 132 aa12.67□□□□□ -0.38
MRPL28-208ENST00000469744 C11orf45Q8TAV5 145 aa12.67□□□□□ -0.38
MRPL28-208ENST00000469744 DPH3P1Q9H4G8 78 aa12.67□□□□□ -0.38
MRPL28-208ENST00000469744 IGHV4-28A0A0C4DH34 117 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 H3BMM0 161 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 M0R381 172 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 IGKV3-20P01619 116 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 CDKN1BP46527 198 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 KIR3DS1Q14943 382 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 LINC01545Q5VT33 79 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 ZNF705AQ6ZN79 300 aaPredicted RBP12.66□□□□□ -0.38
MRPL28-208ENST00000469744 LINC00476Q8WZB0 136 aa12.66□□□□□ -0.38
MRPL28-208ENST00000469744 XCL2Q9UBD3 114 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms