RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RGS21Q2M5E4 152 aa11.02□□□□□ -0.65
CCDC28B-204ENST00000469003 LINC01559Q495D7 138 aa11.02□□□□□ -0.65
CCDC28B-204ENST00000469003 STOML3Q8TAV4 291 aa11.02□□□□□ -0.65
CCDC28B-204ENST00000469003 FLG2Q5D862 2391 aaPredicted RBP11.02□□□□□ -0.65
CCDC28B-204ENST00000469003 LTAP01374 205 aa11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 SMR3BP02814 79 aaPredicted RBP11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 TOR2AQ5JU69 321 aa11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 FAM74A4Q5TZK3 123 aa11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 CST9LP1Q5W188 147 aa11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 DAZ4Q86SG3 579 aaKnown RBP11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 SFRP2Q96HF1 295 aa11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 DAZ3Q9NR90 486 aaKnown RBP11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 PHLDA3Q9Y5J5 127 aa11.01□□□□□ -0.65
CCDC28B-204ENST00000469003 VPS13BQ7Z7G8 4022 aa11□□□□□ -0.65
CCDC28B-204ENST00000469003 TPT1P13693 172 aaKnown RBP11□□□□□ -0.65
CCDC28B-204ENST00000469003 AKR1C3P42330 323 aa11□□□□□ -0.65
CCDC28B-204ENST00000469003 A0A087WWL8 130 aa10.99□□□□□ -0.65
CCDC28B-204ENST00000469003 TMSB15BA0A087X1C1 80 aa10.99□□□□□ -0.65
CCDC28B-204ENST00000469003 HAMPP81172 84 aa10.99□□□□□ -0.65
CCDC28B-204ENST00000469003 WFDC2Q14508 124 aa10.99□□□□□ -0.65
CCDC28B-204ENST00000469003 ZFP82Q8N141 532 aa10.99□□□□□ -0.65
CCDC28B-204ENST00000469003 FAM229AH3BQW9 127 aa10.98□□□□□ -0.65
CCDC28B-204ENST00000469003 M0R381 172 aa10.98□□□□□ -0.65
CCDC28B-204ENST00000469003 PAGE4O60829 102 aa10.98□□□□□ -0.65
CCDC28B-204ENST00000469003 C1QBP02746 253 aa10.98□□□□□ -0.65
CCDC28B-204ENST00000469003 ZNF345Q14585 488 aa10.98□□□□□ -0.65
CCDC28B-204ENST00000469003 KCNRGQ8N5I3 272 aa10.98□□□□□ -0.65
CCDC28B-204ENST00000469003 TRBV10-1A0A0K0K1A3 114 aa10.97□□□□□ -0.65
CCDC28B-204ENST00000469003 SMLR1H3BR10 107 aa10.97□□□□□ -0.65
CCDC28B-204ENST00000469003 NIT1Q86X76 327 aa10.97□□□□□ -0.65
CCDC28B-204ENST00000469003 FAM30AQ9NZY2 134 aa10.97□□□□□ -0.65
CCDC28B-204ENST00000469003 COX11Q9Y6N1 276 aa10.97□□□□□ -0.65
CCDC28B-204ENST00000469003 URGCP-MRPS24S4R325 110 aa10.97□□□□□ -0.65
CCDC28B-204ENST00000469003 MYCBP2O75592 4640 aa10.97□□□□□ -0.65
CCDC28B-204ENST00000469003 S100A9P06702 114 aaKnown RBP10.96□□□□□ -0.65
CCDC28B-204ENST00000469003 SEC11BP0C7V7 166 aa10.96□□□□□ -0.65
CCDC28B-204ENST00000469003 SFT2D1Q8WV19 159 aa10.96□□□□□ -0.65
CCDC28B-204ENST00000469003 MBD3L1Q8WWY6 194 aa10.96□□□□□ -0.65
CCDC28B-204ENST00000469003 RMI2Q96E14 147 aa10.96□□□□□ -0.65
CCDC28B-204ENST00000469003 DNAH8Q96JB1 4490 aa10.96□□□□□ -0.66
CCDC28B-204ENST00000469003 UMAD1C9J7I0 102 aa10.95□□□□□ -0.66
CCDC28B-204ENST00000469003 LECT2O14960 151 aa10.95□□□□□ -0.66
CCDC28B-204ENST00000469003 RPL36AP83881 106 aaKnown RBP10.95□□□□□ -0.66
CCDC28B-204ENST00000469003 FAM213BQ8TBF2 198 aa10.95□□□□□ -0.66
CCDC28B-204ENST00000469003 RPL36ALQ969Q0 106 aaKnown RBP10.95□□□□□ -0.66
CCDC28B-204ENST00000469003 CHCHD7Q9BUK0 85 aa10.95□□□□□ -0.66
CCDC28B-204ENST00000469003 CXCL1P09341 107 aa10.94□□□□□ -0.66
CCDC28B-204ENST00000469003 UBE2D3P61077 147 aa10.94□□□□□ -0.66
CCDC28B-204ENST00000469003 UBE2D2P62837 147 aa10.94□□□□□ -0.66
CCDC28B-204ENST00000469003 TRBV7-3A0A075B6L6 115 aa10.93□□□□□ -0.66
CCDC28B-204ENST00000469003 SCO2A0A1W2PP80 73 aa10.93□□□□□ -0.66
CCDC28B-204ENST00000469003 HMSDA8MTL9 139 aa10.93□□□□□ -0.66
CCDC28B-204ENST00000469003 PFDN1O60925 122 aa10.93□□□□□ -0.66
CCDC28B-204ENST00000469003 BAALCQ8WXS3 180 aa10.93□□□□□ -0.66
CCDC28B-204ENST00000469003 MLST8Q9BVC4 326 aa10.93□□□□□ -0.66
CCDC28B-204ENST00000469003 KLK12Q9UKR0 248 aa10.93□□□□□ -0.66
CCDC28B-204ENST00000469003 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 A0A087WX48 190 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 A0A0D9SG52 128 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 A0A1B0GV50 99 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 RAB4BP61018 213 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 RPL19P84098 196 aaKnown RBP10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 ELOBQ15370 118 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 Q6ZSA8 131 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 BAGE2Q86Y30 109 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 OR10G8Q8NGN5 311 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 DNAJC30Q96LL9 226 aa10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 ZNF471Q9BX82 626 aaPredicted RBP10.92□□□□□ -0.66
CCDC28B-204ENST00000469003 IGKV2D-24A0A075B6R9 120 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 KANTRA0A1W2PQU2 76 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 BCL2L11O43521 198 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 SNAI2O43623 268 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 KCNIP4Q6PIL6 250 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 Q8N976 141 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 OR10AG1Q8NH19 301 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 UBE2WQ96B02 151 aa10.91□□□□□ -0.66
CCDC28B-204ENST00000469003 H2AFB1P0C5Y9 115 aa10.9□□□□□ -0.66
CCDC28B-204ENST00000469003 ZNF56Q15929 161 aa10.9□□□□□ -0.66
CCDC28B-204ENST00000469003 PRR27Q6MZM9 219 aa10.9□□□□□ -0.66
CCDC28B-204ENST00000469003 SSBP4Q9BWG4 385 aaPredicted RBP10.9□□□□□ -0.66
CCDC28B-204ENST00000469003 OR5AL1P0C617 328 aa10.89□□□□□ -0.67
CCDC28B-204ENST00000469003 EIF5AP63241 154 aaKnown RBP10.89□□□□□ -0.67
CCDC28B-204ENST00000469003 Q0VG73 95 aa10.89□□□□□ -0.67
CCDC28B-204ENST00000469003 ATRAIDQ6UW56 229 aa10.89□□□□□ -0.67
CCDC28B-204ENST00000469003 NEXN-AS1Q8NBZ9 246 aa10.89□□□□□ -0.67
CCDC28B-204ENST00000469003 TRBV6-8A0A0A6YYG3 113 aa10.88□□□□□ -0.67
CCDC28B-204ENST00000469003 SPANXN1Q5VSR9 72 aa10.88□□□□□ -0.67
CCDC28B-204ENST00000469003 TMUB2Q71RG4 321 aa10.88□□□□□ -0.67
CCDC28B-204ENST00000469003 RBFOX3A6NFN3 312 aa10.87□□□□□ -0.67
CCDC28B-204ENST00000469003 TMEM262E9PQX1 116 aa10.87□□□□□ -0.67
CCDC28B-204ENST00000469003 J3QL48 77 aa10.87□□□□□ -0.67
CCDC28B-204ENST00000469003 MUC21A0A0G2JKD1 596 aa10.86□□□□□ -0.67
CCDC28B-204ENST00000469003 MUC21A0A140T8X8 626 aa10.86□□□□□ -0.67
CCDC28B-204ENST00000469003 PLA2G1BP04054 148 aaKnown RBP10.86□□□□□ -0.67
CCDC28B-204ENST00000469003 RPL35P42766 123 aaKnown RBP10.86□□□□□ -0.67
CCDC28B-204ENST00000469003 LINC01620Q4KN68 170 aa10.86□□□□□ -0.67
CCDC28B-204ENST00000469003 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.86□□□□□ -0.67
CCDC28B-204ENST00000469003 MANBALQ9NQG1 85 aa10.86□□□□□ -0.67
CCDC28B-204ENST00000469003 F5H697 171 aa10.85□□□□□ -0.67
CCDC28B-204ENST00000469003 PKIAP61925 76 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms