RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 ZMAT4Q9H898 229 aa5.62□□□□□ -1.51
COL6A3-208ENST00000468792 MAP6D1Q9H9H5 199 aa5.62□□□□□ -1.51
COL6A3-208ENST00000468792 MTORP42345 2549 aa5.62□□□□□ -1.51
COL6A3-208ENST00000468792 TCAPO15273 167 aa5.61□□□□□ -1.51
COL6A3-208ENST00000468792 GATA1P15976 413 aaPredicted RBP5.61□□□□□ -1.51
COL6A3-208ENST00000468792 SPINK13Q1W4C9 94 aa5.61□□□□□ -1.51
COL6A3-208ENST00000468792 CD300EQ496F6 205 aaPredicted RBP5.61□□□□□ -1.51
COL6A3-208ENST00000468792 KHDC1LQ5JSQ8 128 aa5.61□□□□□ -1.51
COL6A3-208ENST00000468792 MUC4Q99102 2169 aa5.61□□□□□ -1.51
COL6A3-208ENST00000468792 CITED2Q99967 270 aaPredicted RBP5.61□□□□□ -1.51
COL6A3-208ENST00000468792 PMCHL2Q9BQD1 86 aa5.61□□□□□ -1.51
COL6A3-208ENST00000468792 HECTD1Q9ULT8 2610 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 TRAV12-1A0A0B4J245 112 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 LCE2BO14633 110 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 POLR2KP53803 58 aaKnown RBP5.6□□□□□ -1.51
COL6A3-208ENST00000468792 TMEM158Q8WZ71 300 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 TOMM6Q96B49 74 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 SPXQ9BT56 116 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 SNHG12Q9BXW3 62 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 GOLT1BQ9Y3E0 138 aa5.6□□□□□ -1.51
COL6A3-208ENST00000468792 SORL1Q92673 2214 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 CUBNO60494 3623 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 TRAV12-2A0A075B6T6 113 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 TRAV26-2A0A0B4J265 109 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 TRBV27A0A0K0K1C4 114 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 RBMY1BA6NDE4 496 aaKnown RBP5.59□□□□□ -1.51
COL6A3-208ENST00000468792 RBMY1EA6NEQ0 496 aaKnown RBP5.59□□□□□ -1.51
COL6A3-208ENST00000468792 KNCNA6PVL3 124 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 VCYO14598 125 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 DLEU1O43261 78 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 LY6G6DO95868 133 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 IGLV1-51P01701 117 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 CRYGDP07320 174 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 RBMY1DP0C7P1 496 aaKnown RBP5.59□□□□□ -1.51
COL6A3-208ENST00000468792 ODF3L2Q3SX64 289 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 NDUFA11Q86Y39 141 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 DUX3Q96PT4 197 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 MDFICQ9P1T7 246 aa5.59□□□□□ -1.51
COL6A3-208ENST00000468792 TIMM8BQ9Y5J9 83 aaPredicted RBP5.59□□□□□ -1.51
COL6A3-208ENST00000468792 CBY3A6NI87 242 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 A8MWV9 139 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 OR11H12B2RN74 326 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 H7C1H1 209 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 M0QY20 66 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 M0R2P5 195 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 SIVA1O15304 175 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 INSP01308 110 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 IGKV3-20P01619 116 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 RBMY1A1P0DJD3 496 aaKnown RBP5.58□□□□□ -1.52
COL6A3-208ENST00000468792 RBMY1CP0DJD4 496 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 COX8AP10176 69 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 HNRNPA3P51991 378 aaKnown RBP5.58□□□□□ -1.52
COL6A3-208ENST00000468792 NUTF2P61970 127 aaKnown RBP5.58□□□□□ -1.52
COL6A3-208ENST00000468792 ZNF415Q09FC8 603 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 ODF1Q14990 250 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 RBMY1FQ15415 496 aaKnown RBP5.58□□□□□ -1.52
COL6A3-208ENST00000468792 BEAN1Q3B7T3 259 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 MAJINQ3KP22 176 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 ZNF876PQ49A33 203 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 SUMO4Q6EEV6 95 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 SLC25A34Q6PIV7 304 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 Q6ZN92 141 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 TRPT1Q86TN4 253 aaKnown RBP5.58□□□□□ -1.52
COL6A3-208ENST00000468792 ATOH7Q8N100 152 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 SELENOKQ9Y6D0 94 aa5.58□□□□□ -1.52
COL6A3-208ENST00000468792 NSD1Q96L73 2696 aaPredicted RBP5.58□□□□□ -1.52
COL6A3-208ENST00000468792 NOTCH2Q04721 2471 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 AGRNO00468 2067 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 A0A087WX48 190 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.57□□□□□ -1.52
COL6A3-208ENST00000468792 RHODO00212 210 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 NUDT3O95989 172 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 MGPP08493 103 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 RIPPLY3P57055 190 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 RHOHQ15669 191 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 UFSP1Q6NVU6 142 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 ERASQ7Z444 233 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 RPL39LQ96EH5 51 aaKnown RBP5.57□□□□□ -1.52
COL6A3-208ENST00000468792 KIR2DL4Q99706 377 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 CSTL1Q9H114 145 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 HHLA3Q9XRX5 114 aa5.57□□□□□ -1.52
COL6A3-208ENST00000468792 NIPBLQ6KC79 2804 aaeCLIP5.56□□□□□ -1.52
COL6A3-208ENST00000468792 hDV102S1A0JD36 115 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 DPM2O94777 84 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 PRSS1P07477 247 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 NPSP0C0P6 89 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 PLNP26678 52 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 INSL3P51460 131 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 COL5A1-AS1Q5SY13 56 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 ZFP2Q6ZN57 461 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 STHQ8IWL8 128 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 BOD1L2Q8IYS8 172 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 C11orf72Q8NBR9 251 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 TMEM141Q96I45 108 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 TIMM17AQ99595 171 aa5.56□□□□□ -1.52
COL6A3-208ENST00000468792 SETXQ7Z333 2677 aaKnown RBP5.56□□□□□ -1.52
COL6A3-208ENST00000468792 SETD2Q9BYW2 2564 aaPredicted RBP5.56□□□□□ -1.52
COL6A3-208ENST00000468792 SDHAF1A6NFY7 115 aa5.55□□□□□ -1.52
COL6A3-208ENST00000468792 F8VRH5 84 aa5.55□□□□□ -1.52
COL6A3-208ENST00000468792 SPRY2O43597 315 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms