RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.15□□□□□ -1.1
RFX3-211ENST00000458034 TRBV7-3A0A075B6L6 115 aa8.14□□□□□ -1.11
RFX3-211ENST00000458034 TRBV27A0A0K0K1C4 114 aa8.14□□□□□ -1.11
RFX3-211ENST00000458034 SDHAF1A6NFY7 115 aa8.14□□□□□ -1.11
RFX3-211ENST00000458034 SYNJ2BPP57105 145 aa8.14□□□□□ -1.11
RFX3-211ENST00000458034 PRADC1Q9BSG0 188 aa8.14□□□□□ -1.11
RFX3-211ENST00000458034 ZNF702PQ9H963 129 aa8.14□□□□□ -1.11
RFX3-211ENST00000458034 BEX4Q9NWD9 120 aaPredicted RBP8.14□□□□□ -1.11
RFX3-211ENST00000458034 A0A087WWL8 130 aa8.13□□□□□ -1.11
RFX3-211ENST00000458034 ZNF815PA8K554 130 aa8.13□□□□□ -1.11
RFX3-211ENST00000458034 HOXD3P31249 432 aaPredicted RBP8.13□□□□□ -1.11
RFX3-211ENST00000458034 C12orf74Q32Q52 190 aa8.13□□□□□ -1.11
RFX3-211ENST00000458034 NSUN5P1Q3KNT7 163 aa8.13□□□□□ -1.11
RFX3-211ENST00000458034 PHLDA1Q8WV24 401 aaPredicted RBP8.13□□□□□ -1.11
RFX3-211ENST00000458034 NAA38Q9BRA0 125 aaKnown RBP8.13□□□□□ -1.11
RFX3-211ENST00000458034 KRTAP9-2Q9BYQ4 174 aa8.13□□□□□ -1.11
RFX3-211ENST00000458034 PEMTQ9UBM1 199 aa8.13□□□□□ -1.11
RFX3-211ENST00000458034 SELENOKQ9Y6D0 94 aa8.13□□□□□ -1.11
RFX3-211ENST00000458034 A0A1B0GWB2 263 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 IGIPA6NJ69 53 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 C11orf86A6NJI1 115 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 IGLL5B9A064 214 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 IGKV3-20P01619 116 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 IGHV4-31P0DP07 118 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 PCP4P48539 62 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 SPINK13Q1W4C9 94 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 C4orf48Q5BLP8 95 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 FAM74A4Q5TZK3 123 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 SCGB1D4Q6XE38 83 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 NEGR1Q7Z3B1 354 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 LRRC75A-AS1Q8N1F1 130 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 Q8N1Y9 231 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 TEX29Q8N6K0 151 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 WFDC12Q8WWY7 111 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 NRGNQ92686 78 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 ZNF479Q96JC4 524 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 DUX5Q96PT3 197 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 JPT2Q9H910 190 aa8.12□□□□□ -1.11
RFX3-211ENST00000458034 ZNF256Q9Y2P7 627 aaPredicted RBP8.12□□□□□ -1.11
RFX3-211ENST00000458034 DCHS1Q96JQ0 3298 aa8.11□□□□□ -1.11
RFX3-211ENST00000458034 TRAV12-2A0A075B6T6 113 aa8.11□□□□□ -1.11
RFX3-211ENST00000458034 K7ERJ3 54 aa8.11□□□□□ -1.11
RFX3-211ENST00000458034 TCTEX1D4Q5JR98 221 aa8.11□□□□□ -1.11
RFX3-211ENST00000458034 C10orf99Q6UWK7 81 aa8.11□□□□□ -1.11
RFX3-211ENST00000458034 EDA2RQ9HAV5 297 aa8.11□□□□□ -1.11
RFX3-211ENST00000458034 MDFICQ9P1T7 246 aa8.11□□□□□ -1.11
RFX3-211ENST00000458034 IGLV4-69A0A075B6H9 119 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 I3L3M4 83 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 M0QY20 66 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 HOXA3O43365 443 aaPredicted RBP8.1□□□□□ -1.11
RFX3-211ENST00000458034 CRYGDP07320 174 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 RRN3P1Q2M238 152 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 PIK3CD-AS1Q5SR53 167 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 LYRM7Q5U5X0 104 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 Q8N2B8 174 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 TACC2O95359 2948 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 SPTBN4Q9H254 2564 aa8.1□□□□□ -1.11
RFX3-211ENST00000458034 CR1P17927 2039 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 KRTAP9-6A0A140TA67 174 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 A8MTW9 85 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 TSHBP01222 138 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 ZNF415Q09FC8 603 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 SRSF9Q13242 221 aaKnown RBP eCLIP8.09□□□□□ -1.11
RFX3-211ENST00000458034 CD300EQ496F6 205 aaPredicted RBP8.09□□□□□ -1.11
RFX3-211ENST00000458034 ZNF876PQ49A33 203 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 Q5PR19 223 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 AMTNQ6UX39 209 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 PTH2Q96A98 100 aa8.09□□□□□ -1.11
RFX3-211ENST00000458034 SPANXB1Q9NS25 103 aaPredicted RBP8.09□□□□□ -1.11
RFX3-211ENST00000458034 AGRNO00468 2067 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 A8MWV9 139 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 F8W1H4 67 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 G3V4G9 280 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 LGALS3P17931 250 aaKnown RBP8.08□□□□□ -1.12
RFX3-211ENST00000458034 DEFB113Q30KQ7 82 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 TMEM170BQ5T4T1 132 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 NFE4Q86UQ8 179 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 DYNLRB2Q8TF09 96 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 C4orf3Q8WVX3 66 aa8.08□□□□□ -1.12
RFX3-211ENST00000458034 SPTAN1Q13813 2472 aaKnown RBP8.07□□□□□ -1.12
RFX3-211ENST00000458034 J3QR89 54 aa8.07□□□□□ -1.12
RFX3-211ENST00000458034 LEPROTO15243 131 aa8.07□□□□□ -1.12
RFX3-211ENST00000458034 DEFB131AP59861 70 aa8.07□□□□□ -1.12
RFX3-211ENST00000458034 RPL39P62891 51 aaKnown RBP8.07□□□□□ -1.12
RFX3-211ENST00000458034 MORN3Q6PF18 240 aaPredicted RBP8.07□□□□□ -1.12
RFX3-211ENST00000458034 TMEM86BQ8N661 226 aa8.07□□□□□ -1.12
RFX3-211ENST00000458034 C20orf203Q8NBC4 194 aa8.07□□□□□ -1.12
RFX3-211ENST00000458034 RAX2Q96IS3 184 aa8.07□□□□□ -1.12
RFX3-211ENST00000458034 LINC00467Q9BRT7 94 aa8.07□□□□□ -1.12
RFX3-211ENST00000458034 PRRC2AP48634 2157 aaKnown RBP8.07□□□□□ -1.12
RFX3-211ENST00000458034 KNCNA6PVL3 124 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 M0R2P5 195 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 RHODO00212 210 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 SAP30O75446 220 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 CRYBA4P53673 196 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 SLURP1P55000 103 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 COTL1Q14019 142 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 MAPK1IP1LQ8NDC0 245 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 PLEKHB2Q96CS7 222 aa8.06□□□□□ -1.12
RFX3-211ENST00000458034 DUX3Q96PT4 197 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms