RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 LINC01619G3V211 115 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 SPINK13Q1W4C9 94 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 SUMO4Q6EEV6 95 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 GTSCR1Q86UQ5 136 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 Q8N1Y9 231 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 C4orf3Q8WVX3 66 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 TRBV6-5A0A0K0K1A5 114 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 SLURP1P55000 103 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 JPT2Q9H910 190 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 MDFICQ9P1T7 246 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 PEMTQ9UBM1 199 aa11.17□□□□□ -0.62
LDLR-202ENST00000455727 A8MTW9 85 aa11.16□□□□□ -0.62
LDLR-202ENST00000455727 VCYO14598 125 aa11.16□□□□□ -0.62
LDLR-202ENST00000455727 RBX1P62877 108 aa11.15□□□□□ -0.62
LDLR-202ENST00000455727 C18orf65Q6ZTR6 163 aa11.15□□□□□ -0.62
LDLR-202ENST00000455727 CHTOPQ9Y3Y2 248 aaKnown RBP11.15□□□□□ -0.62
LDLR-202ENST00000455727 AMMECR1LQ6DCA0 310 aa11.15□□□□□ -0.62
LDLR-202ENST00000455727 APCP25054 2843 aa11.15□□□□□ -0.63
LDLR-202ENST00000455727 A0A087WWL8 130 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 H3BRM9 83 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 DEFB136Q30KP8 78 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 OR11H1Q8NG94 326 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 BAALCQ8WXS3 180 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 TRGV11A0A075B6L2 103 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 TRBV27A0A0K0K1C4 114 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 F5H697 171 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 CYSLTR1Q9Y271 337 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 SORL1Q92673 2214 aa11.14□□□□□ -0.63
LDLR-202ENST00000455727 CRYGDP07320 174 aa11.13□□□□□ -0.63
LDLR-202ENST00000455727 KIR2DL4Q99706 377 aa11.13□□□□□ -0.63
LDLR-202ENST00000455727 TRBV25-1A0A075B6N4 114 aa11.13□□□□□ -0.63
LDLR-202ENST00000455727 ZFP2Q6ZN57 461 aa11.13□□□□□ -0.63
LDLR-202ENST00000455727 ZNF256Q9Y2P7 627 aaPredicted RBP11.12□□□□□ -0.63
LDLR-202ENST00000455727 EPG5Q9HCE0 2579 aa11.12□□□□□ -0.63
LDLR-202ENST00000455727 SDHAF1A6NFY7 115 aa11.12□□□□□ -0.63
LDLR-202ENST00000455727 M0QY20 66 aa11.12□□□□□ -0.63
LDLR-202ENST00000455727 DEFB131AP59861 70 aa11.12□□□□□ -0.63
LDLR-202ENST00000455727 CHAC1Q9BUX1 264 aa11.12□□□□□ -0.63
LDLR-202ENST00000455727 TTTY13Q9BZ97 58 aa11.12□□□□□ -0.63
LDLR-202ENST00000455727 TRAV8-6A0A0B4J262 113 aa11.11□□□□□ -0.63
LDLR-202ENST00000455727 C9orf118A6NHY6 69 aa11.11□□□□□ -0.63
LDLR-202ENST00000455727 PRSS29PA6NIE9 313 aa11.11□□□□□ -0.63
LDLR-202ENST00000455727 IGIPA6NJ69 53 aa11.11□□□□□ -0.63
LDLR-202ENST00000455727 H3BMM0 161 aa11.11□□□□□ -0.63
LDLR-202ENST00000455727 PCP4P48539 62 aa11.11□□□□□ -0.63
LDLR-202ENST00000455727 RIPPLY3P57055 190 aa11.11□□□□□ -0.63
LDLR-202ENST00000455727 ZNF876PQ49A33 203 aa11.1□□□□□ -0.63
LDLR-202ENST00000455727 FAM74A4Q5TZK3 123 aa11.1□□□□□ -0.63
LDLR-202ENST00000455727 NEGR1Q7Z3B1 354 aa11.1□□□□□ -0.63
LDLR-202ENST00000455727 TMEM141Q96I45 108 aa11.1□□□□□ -0.63
LDLR-202ENST00000455727 KNCNA6PVL3 124 aa11.1□□□□□ -0.63
LDLR-202ENST00000455727 TRPT1Q86TN4 253 aaKnown RBP11.1□□□□□ -0.63
LDLR-202ENST00000455727 TMEM61Q8N0U2 210 aa11.1□□□□□ -0.63
LDLR-202ENST00000455727 DLX4Q92988 240 aaPredicted RBP11.1□□□□□ -0.63
LDLR-202ENST00000455727 JMJD8Q96S16 334 aa11.1□□□□□ -0.63
LDLR-202ENST00000455727 ZNF56Q15929 161 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 Q6ZSV7 163 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 MAPKAPK5-AS1Q8N8E1 139 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 TIMM17AQ99595 171 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 TP53TG1Q9Y2A0 90 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 RBMY1A1P0DJD3 496 aaKnown RBP11.09□□□□□ -0.63
LDLR-202ENST00000455727 RBMY1CP0DJD4 496 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 RBMY1FQ15415 496 aaKnown RBP11.09□□□□□ -0.63
LDLR-202ENST00000455727 TAL2Q16559 108 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 MORN3Q6PF18 240 aaPredicted RBP11.09□□□□□ -0.63
LDLR-202ENST00000455727 KLHL30-AS1Q8NEE0 82 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 WFDC11Q8NEX6 87 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 TM2D2Q9BX73 214 aa11.09□□□□□ -0.63
LDLR-202ENST00000455727 TSHBP01222 138 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 DEFB114Q30KQ6 69 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 PAPPA-AS1Q5QFB9 102 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 SPAG8Q99932 426 aaPredicted RBP11.08□□□□□ -0.64
LDLR-202ENST00000455727 CST9LQ9H4G1 147 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 EDA2RQ9HAV5 297 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 KHDC1LQ5JSQ8 128 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 PIK3CD-AS1Q5SR53 167 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 MYO9AB2RTY4 2548 aa11.08□□□□□ -0.64
LDLR-202ENST00000455727 ITPR3Q14573 2671 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 OR11H12B2RN74 326 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 E9PLD3 99 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 RHOHQ15669 191 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 C21orf62-AS1Q17RA5 79 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 OR11H2Q8NH07 326 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 DYNLRB2Q8TF09 96 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 DUX3Q96PT4 197 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 RBMY1BA6NDE4 496 aaKnown RBP11.07□□□□□ -0.64
LDLR-202ENST00000455727 RBMY1EA6NEQ0 496 aaKnown RBP11.07□□□□□ -0.64
LDLR-202ENST00000455727 DNAJC9-AS1A6NH13 148 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 RBMY1DP0C7P1 496 aaKnown RBP11.07□□□□□ -0.64
LDLR-202ENST00000455727 GCSHP23434 173 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 PMVKQ15126 192 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 NSUN5P1Q3KNT7 163 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 CEND1Q8N111 149 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 PTH2Q96A98 100 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 MAP6D1Q9H9H5 199 aa11.07□□□□□ -0.64
LDLR-202ENST00000455727 ZNF469Q96JG9 3925 aaPredicted RBP11.06□□□□□ -0.64
LDLR-202ENST00000455727 LINC00467Q9BRT7 94 aa11.06□□□□□ -0.64
LDLR-202ENST00000455727 MYMXA0A1B0GTQ4 84 aa11.06□□□□□ -0.64
LDLR-202ENST00000455727 SMIM13P0DJ93 91 aa11.06□□□□□ -0.64
LDLR-202ENST00000455727 FXYD2P54710 66 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms