RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 SMIM2Q9BVW6 85 aa10.12□□□□□ -0.79
CLK3-203ENST00000454830 STPG4Q8N801 248 aa10.12□□□□□ -0.79
CLK3-203ENST00000454830 CSTL1Q9H114 145 aa10.12□□□□□ -0.79
CLK3-203ENST00000454830 IGHV3-16A0A0C4DH30 117 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 HLA-DRB4P13762 266 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 RASL10AQ92737 203 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 ZNF256Q9Y2P7 627 aaPredicted RBP10.11□□□□□ -0.79
CLK3-203ENST00000454830 HLA-DRB4X5D2U9 266 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 INAFM1C9JVW0 142 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 CRXO43186 299 aaPredicted RBP10.11□□□□□ -0.79
CLK3-203ENST00000454830 HILS1P60008 231 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 LINC01545Q5VT33 79 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 DKK2Q9UBU2 259 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 TRGV11A0A075B6L2 103 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 MED14OSP0DP75 135 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 ODF3Q96PU9 254 aa10.11□□□□□ -0.79
CLK3-203ENST00000454830 SPAG8Q99932 426 aaPredicted RBP10.11□□□□□ -0.79
CLK3-203ENST00000454830 OR11H12B2RN74 326 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 NMUP48645 174 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 SLC25A34Q6PIV7 304 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 JMJD8Q96S16 334 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 ST20Q9HBF5 79 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 SCRT2Q9NQ03 307 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 PF4P02776 101 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 AMTNQ6UX39 209 aa10.1□□□□□ -0.79
CLK3-203ENST00000454830 SUMO4Q6EEV6 95 aa10.09□□□□□ -0.79
CLK3-203ENST00000454830 SCGB3A1Q96QR1 104 aa10.09□□□□□ -0.79
CLK3-203ENST00000454830 TMEM160Q9NX00 188 aa10.09□□□□□ -0.79
CLK3-203ENST00000454830 RBMY1BA6NDE4 496 aaKnown RBP10.08□□□□□ -0.8
CLK3-203ENST00000454830 RBMY1EA6NEQ0 496 aaKnown RBP10.08□□□□□ -0.8
CLK3-203ENST00000454830 RBMY1DP0C7P1 496 aaKnown RBP10.08□□□□□ -0.8
CLK3-203ENST00000454830 RBMY1A1P0DJD3 496 aaKnown RBP10.08□□□□□ -0.8
CLK3-203ENST00000454830 RBMY1CP0DJD4 496 aa10.08□□□□□ -0.8
CLK3-203ENST00000454830 RBMY1FQ15415 496 aaKnown RBP10.08□□□□□ -0.8
CLK3-203ENST00000454830 ZMAT5Q9UDW3 170 aaKnown RBP10.08□□□□□ -0.8
CLK3-203ENST00000454830 NIPBLQ6KC79 2804 aaeCLIP10.08□□□□□ -0.8
CLK3-203ENST00000454830 ATP5LO75964 103 aa10.08□□□□□ -0.8
CLK3-203ENST00000454830 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.07□□□□□ -0.8
CLK3-203ENST00000454830 PPP1R17O96001 155 aa10.07□□□□□ -0.8
CLK3-203ENST00000454830 RPL35AP18077 110 aaKnown RBP10.07□□□□□ -0.8
CLK3-203ENST00000454830 LGALS9BQ3B8N2 356 aa10.07□□□□□ -0.8
CLK3-203ENST00000454830 ORMDL2Q53FV1 153 aa10.07□□□□□ -0.8
CLK3-203ENST00000454830 LGALS9CQ6DKI2 356 aa10.07□□□□□ -0.8
CLK3-203ENST00000454830 KIR2DL4Q99706 377 aa10.06□□□□□ -0.8
CLK3-203ENST00000454830 INSP01308 110 aa10.06□□□□□ -0.8
CLK3-203ENST00000454830 ODF3L2Q3SX64 289 aa10.06□□□□□ -0.8
CLK3-203ENST00000454830 F8P00451 2351 aa10.06□□□□□ -0.8
CLK3-203ENST00000454830 IGLV2-18A0A075B6J9 118 aa10.06□□□□□ -0.8
CLK3-203ENST00000454830 ANKRD39Q53RE8 183 aa10.06□□□□□ -0.8
CLK3-203ENST00000454830 C20orf78Q9BR46 151 aa10.06□□□□□ -0.8
CLK3-203ENST00000454830 SDHAF1A6NFY7 115 aa10.05□□□□□ -0.8
CLK3-203ENST00000454830 LBHQ53QV2 105 aaPredicted RBP10.05□□□□□ -0.8
CLK3-203ENST00000454830 C2orf88Q9BSF0 95 aa10.05□□□□□ -0.8
CLK3-203ENST00000454830 ATRQ13535 2644 aa10.05□□□□□ -0.8
CLK3-203ENST00000454830 G0S2P27469 103 aa10.05□□□□□ -0.8
CLK3-203ENST00000454830 C2orf66Q6UXQ4 117 aa10.05□□□□□ -0.8
CLK3-203ENST00000454830 C9orf85Q96MD7 179 aa10.05□□□□□ -0.8
CLK3-203ENST00000454830 WFDC10AQ9H1F0 79 aa10.05□□□□□ -0.8
CLK3-203ENST00000454830 NUTF2P61970 127 aaKnown RBP10.04□□□□□ -0.8
CLK3-203ENST00000454830 C16orf95Q9H693 158 aa10.04□□□□□ -0.8
CLK3-203ENST00000454830 ZNF415Q09FC8 603 aa10.04□□□□□ -0.8
CLK3-203ENST00000454830 FHL3Q13643 280 aa10.04□□□□□ -0.8
CLK3-203ENST00000454830 MRPL16Q9NX20 251 aaKnown RBP10.04□□□□□ -0.8
CLK3-203ENST00000454830 GTSCR1Q86UQ5 136 aa10.03□□□□□ -0.8
CLK3-203ENST00000454830 MRPL35Q9NZE8 188 aaKnown RBP10.03□□□□□ -0.8
CLK3-203ENST00000454830 TRAV2A0A0B4J234 112 aa10.03□□□□□ -0.8
CLK3-203ENST00000454830 IGKCP01834 107 aa10.03□□□□□ -0.8
CLK3-203ENST00000454830 HIVEP1P15822 2718 aa10.03□□□□□ -0.8
CLK3-203ENST00000454830 KIF25-AS1Q9Y6Z4 181 aa10.03□□□□□ -0.8
CLK3-203ENST00000454830 VCYO14598 125 aa10.02□□□□□ -0.8
CLK3-203ENST00000454830 DPM2O94777 84 aa10.02□□□□□ -0.8
CLK3-203ENST00000454830 TRAV25A0A0B4J276 109 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 NXPH4O95158 308 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 MPV17L2Q567V2 206 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 COL5A1-AS1Q5SY13 56 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 CYSLTR1Q9Y271 337 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 CRYGDP07320 174 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 FOSL1P15407 271 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 PROK1P58294 105 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 LINC00315P59091 139 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 ODF1Q14990 250 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 ZC2HC1BQ5TFG8 222 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 TP53TG1Q9Y2A0 90 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 OTOGQ6ZRI0 2925 aa10.02□□□□□ -0.81
CLK3-203ENST00000454830 P0DMU3 169 aa10.01□□□□□ -0.81
CLK3-203ENST00000454830 FAM231AP0DMU4 169 aa10.01□□□□□ -0.81
CLK3-203ENST00000454830 FAM231CP0DMU5 169 aa10.01□□□□□ -0.81
CLK3-203ENST00000454830 NSD1Q96L73 2696 aaPredicted RBP10.01□□□□□ -0.81
CLK3-203ENST00000454830 EMP1P54849 157 aa10.01□□□□□ -0.81
CLK3-203ENST00000454830 RPL39P62891 51 aaKnown RBP10.01□□□□□ -0.81
CLK3-203ENST00000454830 TRGV1A0A0A0MS02 117 aa10□□□□□ -0.81
CLK3-203ENST00000454830 TTTY13Q9BZ97 58 aa10□□□□□ -0.81
CLK3-203ENST00000454830 M0R2P5 195 aa10□□□□□ -0.81
CLK3-203ENST00000454830 ZNF25P17030 456 aaPredicted RBP10□□□□□ -0.81
CLK3-203ENST00000454830 MRPS16Q9Y3D3 137 aaKnown RBP10□□□□□ -0.81
CLK3-203ENST00000454830 TRAV8-6A0A0B4J262 113 aa10□□□□□ -0.81
CLK3-203ENST00000454830 IGHV3-53P01767 116 aa10□□□□□ -0.81
CLK3-203ENST00000454830 PCP2Q8IVA1 136 aa10□□□□□ -0.81
CLK3-203ENST00000454830 COX8AP10176 69 aa9.99□□□□□ -0.81
CLK3-203ENST00000454830 TRPT1Q86TN4 253 aaKnown RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms