RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 TRAV26-2A0A0B4J265 109 aa14.61□□□□□ -0.07
HMGA1-205ENST00000447654 KLK15Q9H2R5 256 aa14.61□□□□□ -0.07
HMGA1-205ENST00000447654 UBTD1Q9HAC8 227 aa14.61□□□□□ -0.07
HMGA1-205ENST00000447654 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.6□□□□□ -0.07
HMGA1-205ENST00000447654 CRYGDP07320 174 aa14.6□□□□□ -0.07
HMGA1-205ENST00000447654 APELAP0DMC3 54 aa14.6□□□□□ -0.07
HMGA1-205ENST00000447654 EMP1P54849 157 aa14.6□□□□□ -0.07
HMGA1-205ENST00000447654 PMVKQ15126 192 aa14.6□□□□□ -0.07
HMGA1-205ENST00000447654 RNF5Q99942 180 aa14.6□□□□□ -0.07
HMGA1-205ENST00000447654 SPTBN1Q01082 2364 aaKnown RBP14.6□□□□□ -0.07
HMGA1-205ENST00000447654 TRGV11A0A075B6L2 103 aa14.59□□□□□ -0.07
HMGA1-205ENST00000447654 PRB4P10163 310 aaPredicted RBP14.59□□□□□ -0.07
HMGA1-205ENST00000447654 SPANXN1Q5VSR9 72 aa14.59□□□□□ -0.07
HMGA1-205ENST00000447654 TMEM141Q96I45 108 aa14.59□□□□□ -0.07
HMGA1-205ENST00000447654 USP24Q9UPU5 2620 aa14.59□□□□□ -0.07
HMGA1-205ENST00000447654 H7C423 109 aa14.58□□□□□ -0.07
HMGA1-205ENST00000447654 J3QQQ9 107 aa14.58□□□□□ -0.07
HMGA1-205ENST00000447654 EIF4EBP3O60516 100 aaPredicted RBP14.58□□□□□ -0.07
HMGA1-205ENST00000447654 LGALS3P17931 250 aaKnown RBP14.58□□□□□ -0.07
HMGA1-205ENST00000447654 MALRD1Q5VYJ5 2156 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 A0A0J9YX75 114 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 LOC107984640A0A0U1RRK4 108 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 LYNX1G3V0Z9 82 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 IGHV4-39P01824 125 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 LYNX1P0DP58 116 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 Q1RN00 199 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 C3orf56Q8N813 242 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 ZNRF2Q8NHG8 242 aa14.58□□□□□ -0.08
HMGA1-205ENST00000447654 OOSP1A8MZH6 123 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 COX6CP09669 75 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 CRYGAP11844 174 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 CXCL5P42830 114 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 METTL26Q96S19 204 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 DYNLRB1Q9NP97 96 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 PLXNB1O43157 2135 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 DLX1P56177 255 aa14.57□□□□□ -0.08
HMGA1-205ENST00000447654 TSPEAR-AS2P59090 65 aa14.56□□□□□ -0.08
HMGA1-205ENST00000447654 LINC00643Q86TS7 51 aa14.56□□□□□ -0.08
HMGA1-205ENST00000447654 DYNAPQ8N1N2 210 aa14.56□□□□□ -0.08
HMGA1-205ENST00000447654 LOXP28300 417 aaPredicted RBP14.56□□□□□ -0.08
HMGA1-205ENST00000447654 MFAP4P55083 255 aa14.56□□□□□ -0.08
HMGA1-205ENST00000447654 PRB3Q04118 309 aaPredicted RBP14.56□□□□□ -0.08
HMGA1-205ENST00000447654 COL12A1Q99715 3063 aa14.55□□□□□ -0.08
HMGA1-205ENST00000447654 ELANEP08246 267 aa14.55□□□□□ -0.08
HMGA1-205ENST00000447654 COX7CP15954 63 aa14.55□□□□□ -0.08
HMGA1-205ENST00000447654 HIVEP3Q5T1R4 2406 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 SDHAF1A6NFY7 115 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 LEPROTO15243 131 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 TRIAP1O43715 76 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 CNTFRP26992 372 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 IGFBPL1Q8WX77 278 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 TIMM17AQ99595 171 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 CCL21O00585 134 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 DLX6P56179 175 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 DPH3P1Q9H4G8 78 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 C11orf21Q9P2W6 132 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 VPS13CQ709C8 3753 aa14.54□□□□□ -0.08
HMGA1-205ENST00000447654 IGIPA6NJ69 53 aa14.53□□□□□ -0.08
HMGA1-205ENST00000447654 NDUFB3O43676 98 aa14.53□□□□□ -0.08
HMGA1-205ENST00000447654 ADORA2A-AS1P86434 159 aa14.53□□□□□ -0.08
HMGA1-205ENST00000447654 SMAD5-AS1Q9Y6J3 95 aa14.53□□□□□ -0.08
HMGA1-205ENST00000447654 IGHV3-72A0A0B4J1Y9 119 aa14.53□□□□□ -0.08
HMGA1-205ENST00000447654 TMEM223A0PJW6 202 aa14.53□□□□□ -0.08
HMGA1-205ENST00000447654 MUSTN1Q8IVN3 82 aa14.53□□□□□ -0.08
HMGA1-205ENST00000447654 RNF223E7ERA6 249 aa14.52□□□□□ -0.08
HMGA1-205ENST00000447654 GAGE2AQ6NT46 116 aa14.52□□□□□ -0.08
HMGA1-205ENST00000447654 ZNF256Q9Y2P7 627 aaPredicted RBP14.52□□□□□ -0.08
HMGA1-205ENST00000447654 H7C2G1 150 aa14.51□□□□□ -0.09
HMGA1-205ENST00000447654 MRPL53Q96EL3 112 aaKnown RBP14.51□□□□□ -0.09
HMGA1-205ENST00000447654 ZNF876PQ49A33 203 aa14.51□□□□□ -0.09
HMGA1-205ENST00000447654 SDIM1Q6ZPB5 146 aa14.51□□□□□ -0.09
HMGA1-205ENST00000447654 DUX3Q96PT4 197 aa14.51□□□□□ -0.09
HMGA1-205ENST00000447654 KAAG1Q9UBP8 84 aa14.51□□□□□ -0.09
HMGA1-205ENST00000447654 ICOSQ9Y6W8 199 aa14.51□□□□□ -0.09
HMGA1-205ENST00000447654 ARHGAP32A7KAX9 2087 aa14.51□□□□□ -0.09
HMGA1-205ENST00000447654 B9A039 149 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 LST1O00453 97 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 TSHBP01222 138 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 CHD6Q8TD26 2715 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 LY6HO94772 140 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 IGHV1-8P0DP01 117 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 KLRB1Q12918 225 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 FBXL19-AS1Q494R0 122 aa14.5□□□□□ -0.09
HMGA1-205ENST00000447654 IGHV1-3A0A0C4DH29 117 aa14.49□□□□□ -0.09
HMGA1-205ENST00000447654 C5orf38Q86SI9 138 aa14.49□□□□□ -0.09
HMGA1-205ENST00000447654 C14orf178Q8N769 122 aaPredicted RBP14.49□□□□□ -0.09
HMGA1-205ENST00000447654 LINC00527Q9UJ94 153 aa14.49□□□□□ -0.09
HMGA1-205ENST00000447654 UCNP55089 124 aa14.49□□□□□ -0.09
HMGA1-205ENST00000447654 MED14OSP0DP75 135 aa14.48□□□□□ -0.09
HMGA1-205ENST00000447654 MRAPQ8TCY5 172 aa14.48□□□□□ -0.09
HMGA1-205ENST00000447654 TMEM258P61165 79 aa14.47□□□□□ -0.09
HMGA1-205ENST00000447654 CEMP1Q6PRD7 247 aaPredicted RBP14.47□□□□□ -0.09
HMGA1-205ENST00000447654 CFAP46Q8IYW2 2715 aa14.47□□□□□ -0.09
HMGA1-205ENST00000447654 ZFHX3Q15911 3703 aa14.46□□□□□ -0.09
HMGA1-205ENST00000447654 FAM208BQ5VWN6 2430 aa14.46□□□□□ -0.09
HMGA1-205ENST00000447654 PKD1L2Q7Z442 2459 aa14.46□□□□□ -0.09
HMGA1-205ENST00000447654 ATOX1O00244 68 aa14.46□□□□□ -0.09
HMGA1-205ENST00000447654 AGPAT4-IT1Q9H0P7 198 aa14.46□□□□□ -0.09
HMGA1-205ENST00000447654 TP53TG1Q9Y2A0 90 aa14.46□□□□□ -0.09
HMGA1-205ENST00000447654 LENEPQ9Y5L5 61 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms