RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NPC2P61916 151 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 LMO4P61968 165 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 BAALCQ8WXS3 180 aa9.03□□□□□ -0.96
MSH6-204ENST00000445503 KNCNA6PVL3 124 aa9.02□□□□□ -0.96
MSH6-204ENST00000445503 C11orf71Q6IPW1 123 aa9.02□□□□□ -0.96
MSH6-204ENST00000445503 C20orf78Q9BR46 151 aa9.02□□□□□ -0.96
MSH6-204ENST00000445503 CCDC168Q8NDH2 2452 aa9.02□□□□□ -0.97
MSH6-204ENST00000445503 MYO18BQ8IUG5 2567 aa9.02□□□□□ -0.97
MSH6-204ENST00000445503 MRPL53Q96EL3 112 aaKnown RBP9.02□□□□□ -0.97
MSH6-204ENST00000445503 CRYBA4P53673 196 aa9.02□□□□□ -0.97
MSH6-204ENST00000445503 SRSF2Q01130 221 aaKnown RBP9.02□□□□□ -0.97
MSH6-204ENST00000445503 USMG5Q96IX5 58 aa9.02□□□□□ -0.97
MSH6-204ENST00000445503 AJUBAQ96IF1 538 aa9.02□□□□□ -0.97
MSH6-204ENST00000445503 LGALS1P09382 135 aaKnown RBP9.01□□□□□ -0.97
MSH6-204ENST00000445503 SYNJ2BPP57105 145 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 ATP6V0BQ99437 205 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 SMG1Q96Q15 3661 aaKnown RBP9.01□□□□□ -0.97
MSH6-204ENST00000445503 IGHV4-39P01824 125 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 PMVKQ15126 192 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 TAL2Q16559 108 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 PAPPA-AS1Q5QFB9 102 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 OPRPNQ99935 248 aaPredicted RBP9.01□□□□□ -0.97
MSH6-204ENST00000445503 NOTCH2Q04721 2471 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 ADARB2-AS1A8MUL3 147 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 ZFAND2AQ8N6M9 145 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 PLEKHB2Q96CS7 222 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 CNFNQ9BYD5 112 aa9.01□□□□□ -0.97
MSH6-204ENST00000445503 C11orf86A6NJI1 115 aa9□□□□□ -0.97
MSH6-204ENST00000445503 C1orf43Q9BWL3 253 aa9□□□□□ -0.97
MSH6-204ENST00000445503 TM2D2Q9BX73 214 aa9□□□□□ -0.97
MSH6-204ENST00000445503 B5MCH6 92 aa9□□□□□ -0.97
MSH6-204ENST00000445503 RNASE13Q5GAN3 156 aaKnown RBP9□□□□□ -0.97
MSH6-204ENST00000445503 TOMM6Q96B49 74 aa9□□□□□ -0.97
MSH6-204ENST00000445503 SPXQ9BT56 116 aa9□□□□□ -0.97
MSH6-204ENST00000445503 A0A0U1RRA0 63 aa9□□□□□ -0.97
MSH6-204ENST00000445503 SUMO4Q6EEV6 95 aa9□□□□□ -0.97
MSH6-204ENST00000445503 PTH2Q96A98 100 aa9□□□□□ -0.97
MSH6-204ENST00000445503 ZZEF1O43149 2961 aa8.99□□□□□ -0.97
MSH6-204ENST00000445503 E9PLD3 99 aa8.99□□□□□ -0.97
MSH6-204ENST00000445503 TNFRSF18Q9Y5U5 241 aa8.99□□□□□ -0.97
MSH6-204ENST00000445503 DUX3Q96PT4 197 aa8.99□□□□□ -0.97
MSH6-204ENST00000445503 LENEPQ9Y5L5 61 aa8.99□□□□□ -0.97
MSH6-204ENST00000445503 A8MWV9 139 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 C19orf84I3L1E1 186 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 CD28P10747 220 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 ZFP2Q6ZN57 461 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 ZFYVE26Q68DK2 2539 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 Q6ZS46 218 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 COX8CQ7Z4L0 72 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 SPAG8Q99932 426 aaPredicted RBP8.98□□□□□ -0.97
MSH6-204ENST00000445503 NAV2Q8IVL1 2488 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 TRAV12-1A0A0B4J245 112 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 EDN2P20800 178 aa8.98□□□□□ -0.97
MSH6-204ENST00000445503 DYNLRB2Q8TF09 96 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 MDFICQ9P1T7 246 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 IGLV2-18A0A075B6J9 118 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 INSL3P51460 131 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 NEXN-AS1Q8NBZ9 246 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 ZMAT4Q9H898 229 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 C9JAW5 83 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 J3QQQ9 107 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 NRGNQ92686 78 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 ERG28Q9UKR5 140 aa8.97□□□□□ -0.97
MSH6-204ENST00000445503 MSMBP08118 114 aa8.96□□□□□ -0.98
MSH6-204ENST00000445503 IGHV4-30-2A0A087WSY4 118 aa8.96□□□□□ -0.98
MSH6-204ENST00000445503 PHLDA1Q8WV24 401 aaPredicted RBP8.96□□□□□ -0.98
MSH6-204ENST00000445503 SPANXB1Q9NS25 103 aaPredicted RBP8.96□□□□□ -0.98
MSH6-204ENST00000445503 IGHV4-59P01825 116 aa8.95□□□□□ -0.98
MSH6-204ENST00000445503 SPINK8P0C7L1 97 aa8.95□□□□□ -0.98
MSH6-204ENST00000445503 C11orf44Q8N8P7 122 aa8.95□□□□□ -0.98
MSH6-204ENST00000445503 ITLN2Q8WWU7 325 aaPredicted RBP8.95□□□□□ -0.98
MSH6-204ENST00000445503 A0A0J9YXV3 536 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 RNASE3P12724 160 aaKnown RBP8.94□□□□□ -0.98
MSH6-204ENST00000445503 C10orf99Q6UWK7 81 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 LINC01587Q99440 93 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 IGHV1OR15-1A0A075B7D0 117 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 IGHV3-16A0A0C4DH30 117 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 IGHV3-38A0A0C4DH36 116 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 DEFB131AP59861 70 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 Q8N1Y9 231 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 TEX29Q8N6K0 151 aa8.94□□□□□ -0.98
MSH6-204ENST00000445503 TMEM141Q96I45 108 aa8.93□□□□□ -0.98
MSH6-204ENST00000445503 PRO1854Q9UHT4 67 aa8.93□□□□□ -0.98
MSH6-204ENST00000445503 CENPEQ02224 2701 aa8.93□□□□□ -0.98
MSH6-204ENST00000445503 IGKV3OR2-268A0A0C4DH90 116 aa8.93□□□□□ -0.98
MSH6-204ENST00000445503 TRPT1Q86TN4 253 aaKnown RBP8.93□□□□□ -0.98
MSH6-204ENST00000445503 PIFOQ8TCI5 191 aa8.93□□□□□ -0.98
MSH6-204ENST00000445503 TRBV7-3A0A075B6L6 115 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 B4DSR2 109 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 U3KQE9 123 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 A4D1N5 150 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 TSPAN13O95857 204 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 IGHG2P01859 326 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 ZNF625Q96I27 306 aaPredicted RBP8.92□□□□□ -0.98
MSH6-204ENST00000445503 PSMG3-AS1Q96PY0 264 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 COX6CP09669 75 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 DEFB136Q30KP8 78 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 DEFB112Q30KQ8 113 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 RELNP78509 3460 aa8.92□□□□□ -0.98
MSH6-204ENST00000445503 IGHV4-4A0A075B6R2 117 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms