RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 ZNF506Q5JVG8 444 aa5.25□□□□□ -1.57
CD44-211ENST00000442151 TMEM70Q9BUB7 260 aa5.25□□□□□ -1.57
CD44-211ENST00000442151 PHLDA3Q9Y5J5 127 aa5.25□□□□□ -1.57
CD44-211ENST00000442151 ZNF561-AS1K7EIQ3 104 aa5.24□□□□□ -1.57
CD44-211ENST00000442151 EIF3GO75821 320 aaKnown RBP eCLIP5.24□□□□□ -1.57
CD44-211ENST00000442151 INAFM2P0DMQ5 153 aa5.24□□□□□ -1.57
CD44-211ENST00000442151 ZNF80P51504 273 aaPredicted RBP5.24□□□□□ -1.57
CD44-211ENST00000442151 FAM162BQ5T6X4 162 aa5.24□□□□□ -1.57
CD44-211ENST00000442151 RPL7L1Q6DKI1 246 aaKnown RBP5.24□□□□□ -1.57
CD44-211ENST00000442151 OR2T35Q8NGX2 323 aa5.24□□□□□ -1.57
CD44-211ENST00000442151 CHCHD7Q9BUK0 85 aa5.24□□□□□ -1.57
CD44-211ENST00000442151 PARLQ9H300 379 aa5.24□□□□□ -1.57
CD44-211ENST00000442151 TNFRSF18Q9Y5U5 241 aa5.24□□□□□ -1.57
CD44-211ENST00000442151 TRBV10-1A0A0K0K1A3 114 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 LOC100131303A0A0U1RQF7 123 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 UMAD1C9J7I0 102 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 PFDN1O60925 122 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 IGLV2-11P01706 119 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 RNASE3P12724 160 aaKnown RBP5.23□□□□□ -1.57
CD44-211ENST00000442151 RGS21Q2M5E4 152 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 COX8CQ7Z4L0 72 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 IGHV3-73A0A0B4J1V6 119 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 GAGE12JA6NER3 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 FAM74A7A6NL05 159 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 KRBOX1C9JBD0 128 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 TEX46H3BTG2 121 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 IGHV3-30P01768 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 IGHV3-33P01772 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 IGHV3-30-3P0DP02 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 IGHV3-30-5P0DP03 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 UBE2G2P60604 165 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 RPL36AP83881 106 aaKnown RBP5.23□□□□□ -1.57
CD44-211ENST00000442151 GAGE1Q13065 139 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 GAGE4Q13068 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 GAGE5Q13069 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 GAGE13Q4V321 117 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 TMEM97Q5BJF2 176 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 CST9LP1Q5W188 147 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 DPPA3Q6W0C5 159 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 ZFP82Q8N141 532 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 RPL36ALQ969Q0 106 aaKnown RBP5.23□□□□□ -1.57
CD44-211ENST00000442151 Q9HAA7 133 aa5.23□□□□□ -1.57
CD44-211ENST00000442151 TRAV34A0A0B4J273 112 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 IGKV3D-20A0A0C4DH25 116 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 A0A0D9SG52 128 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 MAP1LC3B2A6NCE7 125 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 RNF222A6NCQ9 220 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 ARMS2P0C7Q2 107 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 AKR1C3P42330 323 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 Q0VG73 95 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 C14orf177Q52M58 125 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 Q86TA4 180 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 Q8N814 137 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 Q8N976 141 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 MAP1LC3BQ9GZQ8 125 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 C11orf21Q9P2W6 132 aa5.22□□□□□ -1.57
CD44-211ENST00000442151 A0A087WX48 190 aa5.21□□□□□ -1.58
CD44-211ENST00000442151 CXCL1P09341 107 aa5.21□□□□□ -1.58
CD44-211ENST00000442151 CT83Q5H943 113 aa5.21□□□□□ -1.58
CD44-211ENST00000442151 EIF5AL1Q6IS14 154 aaKnown RBP5.21□□□□□ -1.58
CD44-211ENST00000442151 SFRP2Q96HF1 295 aa5.21□□□□□ -1.58
CD44-211ENST00000442151 CDIP1Q9H305 208 aa5.21□□□□□ -1.58
CD44-211ENST00000442151 KANTRA0A1W2PQU2 76 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 LRCOL1A6NCL2 159 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 H3BVH4 76 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 ARPC5O15511 151 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 SH2D1AO60880 128 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 KRTAP10-1P60331 282 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 RAB4BP61018 213 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 ZNF674Q2M3X9 581 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 LINC00479Q96M42 142 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 ZNF471Q9BX82 626 aaPredicted RBP5.2□□□□□ -1.58
CD44-211ENST00000442151 PLA2G1BP04054 148 aaKnown RBP5.2□□□□□ -1.58
CD44-211ENST00000442151 SMIM17P0DL12 118 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 XGP55808 180 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 ZNF345Q14585 488 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 MBD3L1Q8WWY6 194 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 BIN3Q9NQY0 253 aa5.2□□□□□ -1.58
CD44-211ENST00000442151 HSPG2P98160 4391 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 TRBV7-3A0A075B6L6 115 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 HMSDA8MTL9 139 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 TMEM262E9PQX1 116 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 M0R036 132 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 M0R381 172 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 LTAP01374 205 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 RAB5CP51148 216 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 RPS20P60866 119 aaKnown RBP5.19□□□□□ -1.58
CD44-211ENST00000442151 ZNF726P1Q15940 193 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 Q5BKY6 102 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 FAM74A4Q5TZK3 123 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 Q5VSD8 79 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 BAGE2Q86Y30 109 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 KCNRGQ8N5I3 272 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 SFT2D1Q8WV19 159 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 ZC2HC1AQ96GY0 325 aa5.19□□□□□ -1.58
CD44-211ENST00000442151 XKRY2A2RUG3 117 aa5.18□□□□□ -1.58
CD44-211ENST00000442151 GRIFINA4D1Z8 144 aa5.18□□□□□ -1.58
CD44-211ENST00000442151 RBFOX3A6NFN3 312 aa5.18□□□□□ -1.58
CD44-211ENST00000442151 PAGE4O60829 102 aa5.18□□□□□ -1.58
CD44-211ENST00000442151 SPANXN1Q5VSR9 72 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms