RNA–Protein interactions for RNA: ENST00000439274.6

APP-208, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best) BASIC

Gene APP, Length 2,517 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-208ENST00000439274 PPP1R17O96001 155 aa11.48□□□□□ -0.57
APP-208ENST00000439274 AVPP01185 164 aa11.48□□□□□ -0.57
APP-208ENST00000439274 FAM74A4Q5TZK3 123 aa11.48□□□□□ -0.57
APP-208ENST00000439274 SFTA2Q6UW10 78 aa11.48□□□□□ -0.57
APP-208ENST00000439274 C10orf99Q6UWK7 81 aa11.48□□□□□ -0.57
APP-208ENST00000439274 TRAV12-2A0A075B6T6 113 aa11.48□□□□□ -0.57
APP-208ENST00000439274 HOXA3O43365 443 aaPredicted RBP11.48□□□□□ -0.57
APP-208ENST00000439274 POLR2KP53803 58 aaKnown RBP11.48□□□□□ -0.57
APP-208ENST00000439274 PGPEP1Q9NXJ5 209 aa11.48□□□□□ -0.57
APP-208ENST00000439274 IGHV4OR15-8A0A075B7B6 117 aa11.47□□□□□ -0.57
APP-208ENST00000439274 A0A087WW49 117 aa11.47□□□□□ -0.57
APP-208ENST00000439274 TRBV7-9A0A0J9YWB2 115 aa11.47□□□□□ -0.57
APP-208ENST00000439274 IGIPA6NJ69 53 aa11.47□□□□□ -0.57
APP-208ENST00000439274 TMEM238C9JI98 176 aa11.47□□□□□ -0.57
APP-208ENST00000439274 ZNF688P0C7X2 276 aa11.47□□□□□ -0.57
APP-208ENST00000439274 SDHAF1A6NFY7 115 aa11.46□□□□□ -0.57
APP-208ENST00000439274 CFHR3Q02985 330 aa11.46□□□□□ -0.57
APP-208ENST00000439274 SRSF9Q13242 221 aaKnown RBP eCLIP11.46□□□□□ -0.57
APP-208ENST00000439274 GAGE13Q4V321 117 aa11.46□□□□□ -0.57
APP-208ENST00000439274 PRO0461Q9UI25 63 aa11.46□□□□□ -0.57
APP-208ENST00000439274 ATP5J2P56134 94 aa11.46□□□□□ -0.58
APP-208ENST00000439274 MRPL16Q9NX20 251 aaKnown RBP11.46□□□□□ -0.58
APP-208ENST00000439274 MDFICQ9P1T7 246 aa11.46□□□□□ -0.58
APP-208ENST00000439274 TSSC4Q9Y5U2 329 aaPredicted RBP11.46□□□□□ -0.58
APP-208ENST00000439274 LINC01549A6NIU2 74 aa11.45□□□□□ -0.58
APP-208ENST00000439274 ID1P41134 155 aa11.45□□□□□ -0.58
APP-208ENST00000439274 TSPEAR-AS2P59090 65 aa11.45□□□□□ -0.58
APP-208ENST00000439274 CLEC2AQ6UVW9 174 aa11.45□□□□□ -0.58
APP-208ENST00000439274 ZNF256Q9Y2P7 627 aaPredicted RBP11.45□□□□□ -0.58
APP-208ENST00000439274 MSMBP08118 114 aa11.45□□□□□ -0.58
APP-208ENST00000439274 PMVKQ15126 192 aa11.45□□□□□ -0.58
APP-208ENST00000439274 KIR2DL4Q99706 377 aa11.45□□□□□ -0.58
APP-208ENST00000439274 GTSF1LQ9H1H1 148 aa11.45□□□□□ -0.58
APP-208ENST00000439274 UTP20O75691 2785 aaKnown RBP11.44□□□□□ -0.58
APP-208ENST00000439274 VCYO14598 125 aa11.44□□□□□ -0.58
APP-208ENST00000439274 INSL3P51460 131 aa11.44□□□□□ -0.58
APP-208ENST00000439274 SPAG8Q99932 426 aaPredicted RBP11.44□□□□□ -0.58
APP-208ENST00000439274 FLNCQ14315 2725 aa11.44□□□□□ -0.58
APP-208ENST00000439274 ZNRF2Q8NHG8 242 aa11.44□□□□□ -0.58
APP-208ENST00000439274 OPRPNQ99935 248 aaPredicted RBP11.44□□□□□ -0.58
APP-208ENST00000439274 APOMO95445 188 aa11.43□□□□□ -0.58
APP-208ENST00000439274 RPL32P62910 135 aaKnown RBP11.43□□□□□ -0.58
APP-208ENST00000439274 TMEM170BQ5T4T1 132 aa11.43□□□□□ -0.58
APP-208ENST00000439274 SORL1Q92673 2214 aa11.43□□□□□ -0.58
APP-208ENST00000439274 ZFYVE26Q68DK2 2539 aa11.43□□□□□ -0.58
APP-208ENST00000439274 IGHV3-16A0A0C4DH30 117 aa11.43□□□□□ -0.58
APP-208ENST00000439274 K7EMT4 169 aa11.43□□□□□ -0.58
APP-208ENST00000439274 ZNF843Q8N446 348 aa11.43□□□□□ -0.58
APP-208ENST00000439274 A0A0J9YY99 117 aa11.42□□□□□ -0.58
APP-208ENST00000439274 UBE2D1P51668 147 aa11.42□□□□□ -0.58
APP-208ENST00000439274 ZNF56Q15929 161 aa11.42□□□□□ -0.58
APP-208ENST00000439274 DOPEY2Q9Y3R5 2298 aa11.42□□□□□ -0.58
APP-208ENST00000439274 TSPAN13O95857 204 aa11.42□□□□□ -0.58
APP-208ENST00000439274 IGHV4-59P01825 116 aa11.42□□□□□ -0.58
APP-208ENST00000439274 AZU1P20160 251 aa11.42□□□□□ -0.58
APP-208ENST00000439274 Q8N1Y9 231 aa11.42□□□□□ -0.58
APP-208ENST00000439274 LOC107984156A0A0G2JMH3 177 aa11.41□□□□□ -0.58
APP-208ENST00000439274 LGALS9O00182 355 aa11.41□□□□□ -0.58
APP-208ENST00000439274 PSMB8P28062 276 aa11.41□□□□□ -0.58
APP-208ENST00000439274 HERVK_113P61574 105 aa11.41□□□□□ -0.58
APP-208ENST00000439274 SPINK13Q1W4C9 94 aa11.41□□□□□ -0.58
APP-208ENST00000439274 ARL17AQ8IVW1 177 aa11.41□□□□□ -0.58
APP-208ENST00000439274 TMEM141Q96I45 108 aa11.41□□□□□ -0.58
APP-208ENST00000439274 C9orf85Q96MD7 179 aa11.41□□□□□ -0.58
APP-208ENST00000439274 TRBV27A0A0K0K1C4 114 aa11.41□□□□□ -0.58
APP-208ENST00000439274 TMEM238LA0A1B0GVL6 79 aa11.41□□□□□ -0.58
APP-208ENST00000439274 GAGE12HA6NDE8 117 aa11.41□□□□□ -0.58
APP-208ENST00000439274 A6NJY4 79 aa11.41□□□□□ -0.58
APP-208ENST00000439274 SAMD13Q5VXD3 122 aa11.41□□□□□ -0.58
APP-208ENST00000439274 TIMM17AQ99595 171 aa11.41□□□□□ -0.58
APP-208ENST00000439274 A0A0J9YX75 114 aa11.4□□□□□ -0.58
APP-208ENST00000439274 NRGNQ92686 78 aa11.4□□□□□ -0.58
APP-208ENST00000439274 DUX5Q96PT3 197 aa11.4□□□□□ -0.58
APP-208ENST00000439274 M0QY20 66 aa11.4□□□□□ -0.59
APP-208ENST00000439274 NDUFS8O00217 210 aa11.4□□□□□ -0.59
APP-208ENST00000439274 SMAGPQ0VAQ4 97 aa11.4□□□□□ -0.59
APP-208ENST00000439274 ZNF876PQ49A33 203 aa11.4□□□□□ -0.59
APP-208ENST00000439274 PSMB2P49721 201 aa11.39□□□□□ -0.59
APP-208ENST00000439274 SMCPP49901 116 aaPredicted RBP11.39□□□□□ -0.59
APP-208ENST00000439274 PAPPA-AS1Q5QFB9 102 aa11.39□□□□□ -0.59
APP-208ENST00000439274 ZANQ9Y493 2812 aa11.39□□□□□ -0.59
APP-208ENST00000439274 USP9XQ93008 2570 aaPredicted RBP11.39□□□□□ -0.59
APP-208ENST00000439274 DEFB112Q30KQ8 113 aa11.39□□□□□ -0.59
APP-208ENST00000439274 SIGMAR1Q99720 223 aa11.39□□□□□ -0.59
APP-208ENST00000439274 TRBV6-5A0A0K0K1A5 114 aa11.38□□□□□ -0.59
APP-208ENST00000439274 J3QR89 54 aa11.38□□□□□ -0.59
APP-208ENST00000439274 DOPEY1Q5JWR5 2465 aa11.38□□□□□ -0.59
APP-208ENST00000439274 SYNJ2BPP57105 145 aa11.38□□□□□ -0.59
APP-208ENST00000439274 NDUFA11Q86Y39 141 aa11.38□□□□□ -0.59
APP-208ENST00000439274 DLX4Q92988 240 aaPredicted RBP11.38□□□□□ -0.59
APP-208ENST00000439274 AMELXQ99217 191 aa11.38□□□□□ -0.59
APP-208ENST00000439274 IGHV3-64A0A075B6Q5 118 aa11.37□□□□□ -0.59
APP-208ENST00000439274 IGHV1OR15-1A0A075B7D0 117 aa11.37□□□□□ -0.59
APP-208ENST00000439274 IGHV3-30P01768 117 aa11.37□□□□□ -0.59
APP-208ENST00000439274 P0DMU3 169 aa11.37□□□□□ -0.59
APP-208ENST00000439274 FAM231AP0DMU4 169 aa11.37□□□□□ -0.59
APP-208ENST00000439274 FAM231CP0DMU5 169 aa11.37□□□□□ -0.59
APP-208ENST00000439274 IGHV3-30-5P0DP03 117 aa11.37□□□□□ -0.59
APP-208ENST00000439274 SNRPD3P62318 126 aaKnown RBP11.37□□□□□ -0.59
APP-208ENST00000439274 J3QQQ9 107 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms