RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 ARTNQ5T4W7 220 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 NPYP01303 97 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 CTSZQ9UBR2 303 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 BLCAPP62952 87 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 IGHV4OR15-8A0A075B7B6 117 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 A0A087WW49 117 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 NPBQ8NG41 125 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 RSPO3Q9BXY4 272 aaPredicted RBP9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 SEM1Q6ZVN7 128 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 HHLA3Q9XRX5 114 aa9.42□□□□□ -0.9
CCDC88A-207ENST00000436346 ZNF493Q6ZR52 646 aa9.41□□□□□ -0.9
CCDC88A-207ENST00000436346 ADCYAP1P18509 176 aa9.41□□□□□ -0.9
CCDC88A-207ENST00000436346 PPDPFLQ8WWR9 84 aa9.41□□□□□ -0.9
CCDC88A-207ENST00000436346 ZNF524Q96C55 264 aa9.41□□□□□ -0.9
CCDC88A-207ENST00000436346 C9orf118A6NHY6 69 aa9.41□□□□□ -0.9
CCDC88A-207ENST00000436346 ZNF124Q15973 351 aa9.41□□□□□ -0.9
CCDC88A-207ENST00000436346 IGF2-ASQ6U949 168 aa9.41□□□□□ -0.9
CCDC88A-207ENST00000436346 TRAV4A0A0B4J268 109 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 POLR3KQ9Y2Y1 108 aaPredicted RBP9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 TRBV7-3A0A075B6L6 115 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 IGHV7-81A0A0B4J1V7 117 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 ADORA2A-AS1P86434 159 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 MRPL52Q86TS9 123 aaKnown RBP9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 C5orf38Q86SI9 138 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 ATP6V0E2Q8NHE4 81 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 UTF1Q5T230 341 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 SPANXA1Q9NS26 97 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 C2orf70A6NJV1 201 aa9.4□□□□□ -0.9
CCDC88A-207ENST00000436346 SRCAPQ6ZRS2 3230 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 C9orf47Q6ZRZ4 202 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 FAM231DQ6ZW35 169 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 ZNF726P1Q15940 193 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 ZNF491Q8N8L2 437 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 DNAJC9-AS1A6NH13 148 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 CHKB-CPT1BH3BT56 60 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 COX7B2Q8TF08 81 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 SPRY2O43597 315 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 COX8AP10176 69 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 IFITM1P13164 125 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 Q6ZWC4 215 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 SMAD5-AS1Q9Y6J3 95 aa9.39□□□□□ -0.91
CCDC88A-207ENST00000436346 F8W1H4 67 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 ZNF664Q8N3J9 261 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 TM2D2Q9BX73 214 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 K7EN84 100 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 AMTNQ6UX39 209 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 C10orf105Q8TEF2 133 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 WIPF3A6NGB9 483 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 IGLL5B9A064 214 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 PYY3Q5JQD4 70 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 K7EMI3 77 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 RS1O15537 224 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 AJUBAQ96IF1 538 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 ZFP36P26651 326 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 HIST2H2BCQ6DN03 193 aa9.38□□□□□ -0.91
CCDC88A-207ENST00000436346 DKK2Q9UBU2 259 aa9.37□□□□□ -0.91
CCDC88A-207ENST00000436346 PRSS47A8MTI9 375 aa9.37□□□□□ -0.91
CCDC88A-207ENST00000436346 ATP5G1P05496 136 aa9.37□□□□□ -0.91
CCDC88A-207ENST00000436346 WT1P19544 449 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-207ENST00000436346 IGLC2P0DOY2 106 aa9.37□□□□□ -0.91
CCDC88A-207ENST00000436346 IGLC3P0DOY3 106 aa9.37□□□□□ -0.91
CCDC88A-207ENST00000436346 C11orf53Q8IXP5 236 aa9.37□□□□□ -0.91
CCDC88A-207ENST00000436346 C1orf147Q96MC9 270 aaPredicted RBP9.36□□□□□ -0.91
CCDC88A-207ENST00000436346 C15orf53Q8NAA6 179 aa9.36□□□□□ -0.91
CCDC88A-207ENST00000436346 NCR3O14931 201 aa9.36□□□□□ -0.91
CCDC88A-207ENST00000436346 Q8N1Y9 231 aa9.36□□□□□ -0.91
CCDC88A-207ENST00000436346 RSPO1Q2MKA7 263 aaPredicted RBP9.36□□□□□ -0.91
CCDC88A-207ENST00000436346 RNF138Q8WVD3 245 aa9.36□□□□□ -0.91
CCDC88A-207ENST00000436346 AGPAT4-IT1Q9H0P7 198 aa9.36□□□□□ -0.91
CCDC88A-207ENST00000436346 NDUFA1O15239 70 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 DLEU1O43261 78 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 A0A1W2PPM0 123 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 HERV-K104P63124 156 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 LGALS9BQ3B8N2 356 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 LGALS9CQ6DKI2 356 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 LENEPQ9Y5L5 61 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 ZFP2Q6ZN57 461 aa9.35□□□□□ -0.91
CCDC88A-207ENST00000436346 C11orf52Q96A22 123 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 C9JQL5 133 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 IGHG2P01859 326 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 DAND5Q8N907 189 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 H3BMG7 143 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 FANCD2OSQ96PS1 177 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 K7EP34 96 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 K7EIM0 57 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 BAALC-AS2P0C853 105 aa9.34□□□□□ -0.91
CCDC88A-207ENST00000436346 PRB2P02812 416 aaPredicted RBP9.33□□□□□ -0.92
CCDC88A-207ENST00000436346 IGLV11-55A0A075B6I3 123 aa9.33□□□□□ -0.92
CCDC88A-207ENST00000436346 TMEM263Q8WUH6 116 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-207ENST00000436346 BAALCQ8WXS3 180 aa9.33□□□□□ -0.92
CCDC88A-207ENST00000436346 ANKRD29Q8N6D5 301 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 CENPEQ02224 2701 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 I3L2K1 104 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 SND1-IT1Q9HBX3 110 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 NDUFB1O75438 58 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 RNF183Q96D59 192 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 MAJINQ3KP22 176 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 Q8NFD4 153 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 IGFL2Q6UWQ7 119 aa9.32□□□□□ -0.92
CCDC88A-207ENST00000436346 VSIG2Q96IQ7 327 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 188.9 ms