RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 SFT2D1Q8WV19 159 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 C16orf74Q96GX8 76 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 FAM210BQ96KR6 192 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TCEAL7Q9BRU2 100 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 YTHDF2Q9Y5A9 579 aaKnown RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TIMM8BQ9Y5J9 83 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 ARL2-SNX15V9GYD0 113 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 DNAH3Q8TD57 4116 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 IGHV1OR15-1A0A075B7D0 117 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 LCE6AA0A183 80 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 FAM74A7A6NL05 159 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 F8WDY8 70 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TEX46H3BTG2 121 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 IFNA7P01567 189 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 SULT1A2P50226 295 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 FGF8P55075 233 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-208ENST00000423463 DAD1P61803 113 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 FLI1Q01543 452 aaPredicted RBP1.73□□□□□ -2.13
VPS13A-208ENST00000423463 Q6AWC8 147 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 REG3GQ6UW15 175 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 IQCF2Q8IXL9 164 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 EIF4E3Q8N5X7 224 aaKnown RBP1.73□□□□□ -2.13
VPS13A-208ENST00000423463 CYB561D1Q8N8Q1 229 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 FAM213BQ8TBF2 198 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TMEM263Q8WUH6 116 aaKnown RBP1.73□□□□□ -2.13
VPS13A-208ENST00000423463 HIST1H2BAQ96A08 127 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 NDFIP1Q9BT67 221 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TREM1Q9NP99 234 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 CELA1Q9UNI1 258 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 PSG8Q9UQ74 426 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 DEFB131BA0A096LNP1 70 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TRAV21A0A0B4J279 112 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TRBV6-1A0A0K0K1D8 114 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 PLAC8L1A1L4L8 177 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 GGTLC3B5MD39 225 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 PRM2P04554 102 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 S100A9P06702 114 aaKnown RBP1.73□□□□□ -2.13
VPS13A-208ENST00000423463 HTN1P15515 57 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 UBE2G2P60604 165 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 GNG5P63218 68 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 DAZ2Q13117 558 aaKnown RBP1.73□□□□□ -2.13
VPS13A-208ENST00000423463 BTN1A1Q13410 526 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TDRG1Q3Y452 100 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 IBA57Q5T440 356 aaKnown RBP1.73□□□□□ -2.13
VPS13A-208ENST00000423463 C9orf62Q8N4C0 152 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 LINC00612Q8N6U2 182 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TMEM75Q8N9X5 138 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF680Q8NEM1 530 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 Q8TAT8 98 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TVP23CQ96ET8 276 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 KCNS1Q96KK3 526 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TXNDC17Q9BRA2 123 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TP53TG3Q9ULZ0 132 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 RPH3ALQ9UNE2 315 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 ZFP30Q9Y2G7 519 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 KLF12Q9Y4X4 402 aa1.73□□□□□ -2.13
VPS13A-208ENST00000423463 TRAV8-1A0A0A6YYK1 113 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 FABP5P3A8MUU1 101 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 IGLL5B9A064 214 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 PEX7O00628 323 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 ATP5G1P05496 136 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 DEFB130BP0DP73 79 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 DEFB130AP0DP74 79 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 ATP5G3P48201 142 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 TCL1AP56279 114 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 LGALS9BQ3B8N2 356 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 SMUG1Q53HV7 270 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 PRR9Q5T870 116 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 LGALS9CQ6DKI2 356 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF767PQ75MW2 155 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 PRNTQ86SH4 94 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 C18orf15Q96N68 181 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 NOP10Q9NPE3 64 aaKnown RBP1.72□□□□□ -2.13
VPS13A-208ENST00000423463 MANBALQ9NQG1 85 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 APLNQ9ULZ1 77 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 STAB2Q8WWQ8 2551 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 TENM3Q9P273 2699 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 RPL37AP8A6NKH3 93 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 IFNA1P01562 189 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 PFN1P07737 140 aaKnown RBP1.72□□□□□ -2.13
VPS13A-208ENST00000423463 TAGLN2P37802 199 aaKnown RBP1.72□□□□□ -2.13
VPS13A-208ENST00000423463 AKR1C3P42330 323 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 UBE2G1P62253 170 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 CCL20P78556 96 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 TMEM183BQ1AE95 376 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF506Q5JVG8 444 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 C11orf72Q8NBR9 251 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 PTH2Q96A98 100 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 FMC1Q96HJ9 113 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 NBEAL2Q6ZNJ1 2754 aa1.72□□□□□ -2.13
VPS13A-208ENST00000423463 PRKDCP78527 4128 aaKnown RBP1.72□□□□□ -2.13
VPS13A-208ENST00000423463 A0A1B0GV50 99 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 F5H768 121 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 GNRH2O43555 120 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 SPINK4O60575 86 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 GCGP01275 180 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 HTN3P15516 51 aa1.71□□□□□ -2.14
VPS13A-208ENST00000423463 ZNF80P51504 273 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-208ENST00000423463 NKX2-5P52952 324 aaPredicted RBP1.71□□□□□ -2.14
VPS13A-208ENST00000423463 SLAQ13239 276 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms