RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 POM121L12Q8N7R1 296 aa10.14□□□□□ -0.79
SF3B1-204ENST00000414963 JPT2Q9H910 190 aa10.14□□□□□ -0.79
SF3B1-204ENST00000414963 TRAV4A0A0B4J268 109 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 GAGE12BA1L429 117 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 GAGE7O76087 117 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 HLA-DQA1P01909 254 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 GAGE12FP0CL80 117 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 GAGE12GP0CL81 117 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 GAGE12IP0CL82 117 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 FAM104BQ5XKR9 115 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 SAMD10Q9BYL1 202 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 DPH3P1Q9H4G8 78 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 DNAH9Q9NYC9 4486 aa10.13□□□□□ -0.79
SF3B1-204ENST00000414963 TRGV2A0A075B6R0 118 aa10.12□□□□□ -0.79
SF3B1-204ENST00000414963 A0A0J9YWU9 116 aa10.12□□□□□ -0.79
SF3B1-204ENST00000414963 RHODO00212 210 aa10.12□□□□□ -0.79
SF3B1-204ENST00000414963 SMIM17P0DL12 118 aa10.12□□□□□ -0.79
SF3B1-204ENST00000414963 FRZBQ92765 325 aa10.12□□□□□ -0.79
SF3B1-204ENST00000414963 RNF185Q96GF1 192 aa10.12□□□□□ -0.79
SF3B1-204ENST00000414963 CELA1Q9UNI1 258 aa10.12□□□□□ -0.79
SF3B1-204ENST00000414963 A0A087WWL8 130 aa10.11□□□□□ -0.79
SF3B1-204ENST00000414963 DEFB130BP0DP73 79 aa10.11□□□□□ -0.79
SF3B1-204ENST00000414963 DEFB130AP0DP74 79 aa10.11□□□□□ -0.79
SF3B1-204ENST00000414963 RAB4AP20338 218 aa10.11□□□□□ -0.79
SF3B1-204ENST00000414963 RAB4BP61018 213 aa10.11□□□□□ -0.79
SF3B1-204ENST00000414963 OR4C5Q8NGB2 326 aa10.11□□□□□ -0.79
SF3B1-204ENST00000414963 FBN3Q75N90 2809 aa10.11□□□□□ -0.79
SF3B1-204ENST00000414963 HUWE1Q7Z6Z7 4374 aaKnown RBP10.11□□□□□ -0.79
SF3B1-204ENST00000414963 DAD1P61803 113 aa10.1□□□□□ -0.79
SF3B1-204ENST00000414963 AMN1Q8IY45 258 aa10.1□□□□□ -0.79
SF3B1-204ENST00000414963 ZNF479Q96JC4 524 aa10.1□□□□□ -0.79
SF3B1-204ENST00000414963 TRAPPC1Q9Y5R8 145 aa10.1□□□□□ -0.79
SF3B1-204ENST00000414963 APCSP02743 223 aa10.09□□□□□ -0.79
SF3B1-204ENST00000414963 RPS10P46783 165 aaKnown RBP10.09□□□□□ -0.79
SF3B1-204ENST00000414963 SLAQ13239 276 aa10.09□□□□□ -0.79
SF3B1-204ENST00000414963 C12orf74Q32Q52 190 aa10.09□□□□□ -0.79
SF3B1-204ENST00000414963 MRPL18Q9H0U6 180 aaKnown RBP10.09□□□□□ -0.79
SF3B1-204ENST00000414963 EDA2RQ9HAV5 297 aa10.09□□□□□ -0.79
SF3B1-204ENST00000414963 PRKDCP78527 4128 aaKnown RBP10.09□□□□□ -0.79
SF3B1-204ENST00000414963 COL7A1Q02388 2944 aa10.09□□□□□ -0.79
SF3B1-204ENST00000414963 PHOX2AO14813 284 aa10.08□□□□□ -0.8
SF3B1-204ENST00000414963 PPBPP02775 128 aa10.08□□□□□ -0.8
SF3B1-204ENST00000414963 FHL2Q14192 279 aa10.08□□□□□ -0.8
SF3B1-204ENST00000414963 MRPL51Q4U2R6 128 aaKnown RBP10.08□□□□□ -0.8
SF3B1-204ENST00000414963 FAM74A4Q5TZK3 123 aa10.08□□□□□ -0.8
SF3B1-204ENST00000414963 MRAP2Q96G30 205 aa10.08□□□□□ -0.8
SF3B1-204ENST00000414963 U3KQK5 164 aa10.08□□□□□ -0.8
SF3B1-204ENST00000414963 STAB2Q8WWQ8 2551 aa10.07□□□□□ -0.8
SF3B1-204ENST00000414963 IGHV3-53P01767 116 aa10.07□□□□□ -0.8
SF3B1-204ENST00000414963 ATP5G1P05496 136 aa10.07□□□□□ -0.8
SF3B1-204ENST00000414963 FABP9Q0Z7S8 132 aa10.07□□□□□ -0.8
SF3B1-204ENST00000414963 Q6ZSN1 163 aa10.07□□□□□ -0.8
SF3B1-204ENST00000414963 C11orf45Q8TAV5 145 aa10.07□□□□□ -0.8
SF3B1-204ENST00000414963 M0QY20 66 aa10.06□□□□□ -0.8
SF3B1-204ENST00000414963 TRGC2P03986 189 aa10.06□□□□□ -0.8
SF3B1-204ENST00000414963 MGPP08493 103 aa10.06□□□□□ -0.8
SF3B1-204ENST00000414963 GATA1P15976 413 aaPredicted RBP10.06□□□□□ -0.8
SF3B1-204ENST00000414963 SUMO4Q6EEV6 95 aa10.06□□□□□ -0.8
SF3B1-204ENST00000414963 IGHV3-73A0A0B4J1V6 119 aa10.05□□□□□ -0.8
SF3B1-204ENST00000414963 TRBV6-4A0A1B0GX49 114 aa10.05□□□□□ -0.8
SF3B1-204ENST00000414963 F5H697 171 aa10.05□□□□□ -0.8
SF3B1-204ENST00000414963 CKS2P33552 79 aa10.05□□□□□ -0.8
SF3B1-204ENST00000414963 ZNF56Q15929 161 aa10.05□□□□□ -0.8
SF3B1-204ENST00000414963 ORMDL3Q8N138 153 aa10.05□□□□□ -0.8
SF3B1-204ENST00000414963 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.05□□□□□ -0.8
SF3B1-204ENST00000414963 TRGV4A0A0C4DH28 118 aa10.04□□□□□ -0.8
SF3B1-204ENST00000414963 H7C1H1 209 aa10.04□□□□□ -0.8
SF3B1-204ENST00000414963 PPP1R17O96001 155 aa10.04□□□□□ -0.8
SF3B1-204ENST00000414963 HOXA5P20719 270 aa10.04□□□□□ -0.8
SF3B1-204ENST00000414963 HHLA3Q9XRX5 114 aa10.04□□□□□ -0.8
SF3B1-204ENST00000414963 LAMTOR2Q9Y2Q5 125 aa10.04□□□□□ -0.8
SF3B1-204ENST00000414963 NACAE9PAV3 2078 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 TRAV26-2A0A0B4J265 109 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 TRBV10-1A0A0K0K1A3 114 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 D6R8Y8 96 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 NANOS2P60321 138 aaKnown RBP10.03□□□□□ -0.8
SF3B1-204ENST00000414963 KIAA1644Q3SXP7 199 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 SLC25A29Q8N8R3 303 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 NRACQ8N912 160 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 ALKBH7Q9BT30 221 aaPredicted RBP10.03□□□□□ -0.8
SF3B1-204ENST00000414963 PRO0255Q9UI72 69 aa10.03□□□□□ -0.8
SF3B1-204ENST00000414963 TRBV6-5A0A0K0K1A5 114 aa10.02□□□□□ -0.81
SF3B1-204ENST00000414963 GAS8-AS1O95177 125 aa10.02□□□□□ -0.81
SF3B1-204ENST00000414963 CRYBA4P53673 196 aa10.02□□□□□ -0.81
SF3B1-204ENST00000414963 Q6ZTC4 211 aa10.02□□□□□ -0.81
SF3B1-204ENST00000414963 PRELID3AQ96N28 172 aa10.02□□□□□ -0.81
SF3B1-204ENST00000414963 NIT2Q9NQR4 276 aa10.02□□□□□ -0.81
SF3B1-204ENST00000414963 PRSS47A8MTI9 375 aa10.01□□□□□ -0.81
SF3B1-204ENST00000414963 SMKR1H3BMG3 65 aa10.01□□□□□ -0.81
SF3B1-204ENST00000414963 K7EQD1 137 aa10.01□□□□□ -0.81
SF3B1-204ENST00000414963 NCR2O95944 276 aa10.01□□□□□ -0.81
SF3B1-204ENST00000414963 RHOHQ15669 191 aa10.01□□□□□ -0.81
SF3B1-204ENST00000414963 DNAJC30Q96LL9 226 aa10.01□□□□□ -0.81
SF3B1-204ENST00000414963 F5H768 121 aa10□□□□□ -0.81
SF3B1-204ENST00000414963 TNFRSF6BO95407 300 aa10□□□□□ -0.81
SF3B1-204ENST00000414963 SRIP30626 198 aa10□□□□□ -0.81
SF3B1-204ENST00000414963 C20orf78Q9BR46 151 aa10□□□□□ -0.81
SF3B1-204ENST00000414963 PRADC1Q9BSG0 188 aa10□□□□□ -0.81
SF3B1-204ENST00000414963 TRAV10A0A0B4J240 114 aa9.99□□□□□ -0.81
SF3B1-204ENST00000414963 C1orf196B1AJZ1 125 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms