RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 GAGE12BA1L429 117 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 GAGE7O76087 117 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 GAS8-AS1O95177 125 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 MT-ND6P03923 174 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 CRYGDP07320 174 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 GAGE12FP0CL80 117 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 GAGE12GP0CL81 117 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 GAGE12IP0CL82 117 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 LINC00315P59091 139 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 FAM222AQ5U5X8 452 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 FAM104BQ5XKR9 115 aa6.9□□□□□ -1.3
RIF1-202ENST00000414861 APCSP02743 223 aa6.9□□□□□ -1.31
RIF1-202ENST00000414861 LGALS9BQ3B8N2 356 aa6.9□□□□□ -1.31
RIF1-202ENST00000414861 COX19Q49B96 90 aa6.9□□□□□ -1.31
RIF1-202ENST00000414861 CFAP126Q5VTH2 177 aa6.9□□□□□ -1.31
RIF1-202ENST00000414861 STAB2Q8WWQ8 2551 aa6.9□□□□□ -1.31
RIF1-202ENST00000414861 IGHV3-73A0A0B4J1V6 119 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 TRAV26-2A0A0B4J265 109 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 MGPP08493 103 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 RAB4AP20338 218 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 MRPL51Q4U2R6 128 aaKnown RBP6.89□□□□□ -1.31
RIF1-202ENST00000414861 PIK3CD-AS1Q5SR53 167 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 UFSP1Q6NVU6 142 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 SPATA25Q9BR10 227 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 DPH3P1Q9H4G8 78 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 DKK2Q9UBU2 259 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 SMKR1H3BMG3 65 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 NCR2O95944 276 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 DEFB130BP0DP73 79 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 DEFB130AP0DP74 79 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 SMIM15Q7Z3B0 74 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 LINC00612Q8N6U2 182 aa6.89□□□□□ -1.31
RIF1-202ENST00000414861 IGHV3-53P01767 116 aa6.88□□□□□ -1.31
RIF1-202ENST00000414861 B9D2Q9BPU9 175 aa6.88□□□□□ -1.31
RIF1-202ENST00000414861 A8MWV9 139 aa6.88□□□□□ -1.31
RIF1-202ENST00000414861 RS1O15537 224 aa6.88□□□□□ -1.31
RIF1-202ENST00000414861 SMIM17P0DL12 118 aa6.88□□□□□ -1.31
RIF1-202ENST00000414861 GATA1P15976 413 aaPredicted RBP6.88□□□□□ -1.31
RIF1-202ENST00000414861 ZNF479Q96JC4 524 aa6.88□□□□□ -1.31
RIF1-202ENST00000414861 TRGV2A0A075B6R0 118 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 A0A0J9YWU9 116 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 D6R8Y8 96 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 Q6ZSN1 163 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 NDUFAF3Q9BU61 184 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 C11orf68Q9H3H3 251 aaKnown RBP6.87□□□□□ -1.31
RIF1-202ENST00000414861 LYRM9A8MSI8 78 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 SRIP30626 198 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 ZNF56Q15929 161 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 SUMO4Q6EEV6 95 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 OR4C5Q8NGB2 326 aa6.87□□□□□ -1.31
RIF1-202ENST00000414861 TMA7Q9Y2S6 64 aaKnown RBP6.87□□□□□ -1.31
RIF1-202ENST00000414861 FBN3Q75N90 2809 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 TRAV4A0A0B4J268 109 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BKO60814 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BJP06899 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BOP23527 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BBP33778 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BDP58876 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BCP62807 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST2H2BEQ16778 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BHQ93079 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BNQ99877 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 HIST1H2BMQ99879 126 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 C1orf196B1AJZ1 125 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 F5H697 171 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 ALKBH7Q9BT30 221 aaPredicted RBP6.86□□□□□ -1.31
RIF1-202ENST00000414861 U3KQK5 164 aa6.86□□□□□ -1.31
RIF1-202ENST00000414861 SPART-AS1P0CW21 52 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 P0DMU3 169 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 FAM231AP0DMU4 169 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 FAM231CP0DMU5 169 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 RPL39LQ96EH5 51 aaKnown RBP6.85□□□□□ -1.31
RIF1-202ENST00000414861 ZMAT4Q9H898 229 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 Q9UF83 564 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 RHODO00212 210 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 NPYP01303 97 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 CKS2P33552 79 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 DAD1P61803 113 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 ORMDL3Q8N138 153 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 NRACQ8N912 160 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 PRELID3AQ96N28 172 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 C18orf15Q96N68 181 aa6.85□□□□□ -1.31
RIF1-202ENST00000414861 M0QY20 66 aa6.84□□□□□ -1.31
RIF1-202ENST00000414861 IQCJQ1A5X6 159 aa6.84□□□□□ -1.31
RIF1-202ENST00000414861 ZFP2Q6ZN57 461 aa6.84□□□□□ -1.31
RIF1-202ENST00000414861 MRAP2Q96G30 205 aa6.84□□□□□ -1.31
RIF1-202ENST00000414861 HOXA5P20719 270 aa6.84□□□□□ -1.31
RIF1-202ENST00000414861 C12orf74Q32Q52 190 aa6.84□□□□□ -1.31
RIF1-202ENST00000414861 FHL2Q14192 279 aa6.83□□□□□ -1.32
RIF1-202ENST00000414861 C18orf32Q8TCD1 76 aa6.83□□□□□ -1.32
RIF1-202ENST00000414861 TNFRSF6BO95407 300 aa6.83□□□□□ -1.32
RIF1-202ENST00000414861 PPBPP02775 128 aa6.83□□□□□ -1.32
RIF1-202ENST00000414861 RAB5BP61020 215 aa6.83□□□□□ -1.32
RIF1-202ENST00000414861 NANOS2P60321 138 aaKnown RBP6.82□□□□□ -1.32
RIF1-202ENST00000414861 SLC25A29Q8N8R3 303 aa6.82□□□□□ -1.32
RIF1-202ENST00000414861 TRGV4A0A0C4DH28 118 aa6.82□□□□□ -1.32
RIF1-202ENST00000414861 TEX48A0A1B0GUV7 120 aa6.82□□□□□ -1.32
RIF1-202ENST00000414861 Q6ZTC4 211 aa6.82□□□□□ -1.32
RIF1-202ENST00000414861 EDA2RQ9HAV5 297 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 159.9 ms