RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PTPRBP23467 1997 aa10.55□□□□□ -0.72
CCDC88A-204ENST00000413716 IGKV1D-17A0A075B6S4 117 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 CUL9Q8IWT3 2517 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 CENPVL3A0A0U1RRI6 287 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 IGHV2-5P01817 119 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 LY6DQ14210 128 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 RUSC1-AS1Q66K80 236 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 COX7BP24311 80 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 BPESC1Q9GZL8 116 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 WFDC2Q14508 124 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 ZNF747Q9BV97 191 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 C20orf197Q8N268 126 aa10.54□□□□□ -0.72
CCDC88A-204ENST00000413716 DOPEY1Q5JWR5 2465 aa10.53□□□□□ -0.72
CCDC88A-204ENST00000413716 ZNF833PQ6ZTB9 187 aa10.53□□□□□ -0.72
CCDC88A-204ENST00000413716 FAM208BQ5VWN6 2430 aa10.53□□□□□ -0.72
CCDC88A-204ENST00000413716 SDIM1Q6ZPB5 146 aa10.53□□□□□ -0.72
CCDC88A-204ENST00000413716 SPACA3Q8IXA5 215 aa10.53□□□□□ -0.72
CCDC88A-204ENST00000413716 NOTCH4Q99466 2003 aa10.53□□□□□ -0.72
CCDC88A-204ENST00000413716 PCNX3Q9H6A9 2034 aa10.52□□□□□ -0.72
CCDC88A-204ENST00000413716 TEX49A0A1B0GTD5 131 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 FXYD5Q96DB9 178 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 PRR20EP86478 221 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 PRR20CP86479 221 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 PRR20DP86480 221 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 PRR20BP86481 221 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 PRR20AP86496 221 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 HIGD1BQ9P298 99 aa10.52□□□□□ -0.73
CCDC88A-204ENST00000413716 TRBV7-3A0A075B6L6 115 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 IGHV1-69P01742 117 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 VPREB1P12018 145 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 GGNQ86UU5 652 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 A0A0G2JNJ9 132 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 MLANAQ16655 118 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 Q9UFV3 132 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 TIMM17BO60830 172 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 C10orf91Q5T1B1 145 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 ASPHD1Q5U4P2 390 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 SERP2Q8N6R1 65 aa10.51□□□□□ -0.73
CCDC88A-204ENST00000413716 IGHV3-30P01768 117 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 IGHV3-33P01772 117 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 IGHV3-30-3P0DP02 117 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 IGHV3-30-5P0DP03 117 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 LYPD6BQ8NI32 183 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 RPL39LQ96EH5 51 aaKnown RBP10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 Q8N1Y9 231 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 LENEPQ9Y5L5 61 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 IGHV1-58A0A0C4DH39 117 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 GNRH2O43555 120 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 LYPD2Q6UXB3 125 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 IGLV3-9A0A075B6K5 115 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 LINC00205P59089 165 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 C14orf177Q52M58 125 aa10.5□□□□□ -0.73
CCDC88A-204ENST00000413716 PIK3CD-AS1Q5SR53 167 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 J3QLI3 93 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 RNF223E7ERA6 249 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 F8W735 103 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 K7EM74 188 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 PMAIP1Q13794 54 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 C16orf54Q6UWD8 224 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 G3V318 75 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 IGLV2-23P01705 113 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 SPART-AS1P0CW21 52 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 ZNF491Q8N8L2 437 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 NDUFA7O95182 113 aa10.49□□□□□ -0.73
CCDC88A-204ENST00000413716 C5orf24Q7Z6I8 188 aa10.48□□□□□ -0.73
CCDC88A-204ENST00000413716 IGLV3-12A0A075B6K2 115 aa10.48□□□□□ -0.73
CCDC88A-204ENST00000413716 ENHOQ6UWT2 76 aa10.48□□□□□ -0.73
CCDC88A-204ENST00000413716 FAM120AOSQ5T036 256 aa10.48□□□□□ -0.73
CCDC88A-204ENST00000413716 COL8A2P25067 703 aa10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 QRFPP83859 136 aa10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 BLCAPP62952 87 aa10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 EIF4EBP2Q13542 120 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 Q6ZRM9 215 aa10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 H3BUA1 57 aa10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 FXYD2P54710 66 aa10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 A0A0G2JRQ6 117 aa10.47□□□□□ -0.73
CCDC88A-204ENST00000413716 RNASE8Q8TDE3 154 aaKnown RBP10.46□□□□□ -0.73
CCDC88A-204ENST00000413716 TOMM6Q96B49 74 aa10.46□□□□□ -0.73
CCDC88A-204ENST00000413716 NPBQ8NG41 125 aa10.46□□□□□ -0.73
CCDC88A-204ENST00000413716 IGLC6P0CF74 106 aa10.46□□□□□ -0.74
CCDC88A-204ENST00000413716 A0A0J9YWU9 116 aa10.46□□□□□ -0.74
CCDC88A-204ENST00000413716 K7EN84 100 aa10.46□□□□□ -0.74
CCDC88A-204ENST00000413716 HHLA3Q9XRX5 114 aa10.46□□□□□ -0.74
CCDC88A-204ENST00000413716 SPAG11BQ08648 103 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 C11orf86A6NJI1 115 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 CCL24O00175 119 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 Q8N9L7 120 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 FAM19A3Q7Z5A8 133 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 PTH2Q96A98 100 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 COLQQ9Y215 455 aaPredicted RBP10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 ABCA2Q9BZC7 2435 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 GPHB5Q86YW7 130 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 C9orf85Q96MD7 179 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 Q96MF0 132 aa10.45□□□□□ -0.74
CCDC88A-204ENST00000413716 C9orf66Q5T8R8 295 aa10.44□□□□□ -0.74
CCDC88A-204ENST00000413716 PINLYPA6NC86 204 aa10.44□□□□□ -0.74
CCDC88A-204ENST00000413716 LRP4O75096 1905 aa10.44□□□□□ -0.74
CCDC88A-204ENST00000413716 IGKV1-6A0A0C4DH72 117 aa10.44□□□□□ -0.74
CCDC88A-204ENST00000413716 CTSGP08311 255 aa10.43□□□□□ -0.74
CCDC88A-204ENST00000413716 KLK5Q9Y337 293 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms