RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 C1orf229Q6ZS94 237 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-211ENST00000413186 SERF1AO75920 110 aa6.64□□□□□ -1.35
SYNE1-211ENST00000413186 CTSGP08311 255 aa6.64□□□□□ -1.35
SYNE1-211ENST00000413186 Q8N6K4 173 aa6.64□□□□□ -1.35
SYNE1-211ENST00000413186 K7EMT4 169 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 GPHB5Q86YW7 130 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 VGLL1Q99990 258 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 A0A1B0GX51 115 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 DEFB131AP59861 70 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 C8orf86Q6ZUL3 223 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 NKAPP1Q8N9T2 125 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 TMEM75Q8N9X5 138 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 FAM19A2Q8N3H0 131 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 FANCD2OSQ96PS1 177 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 SPANXDQ9BXN6 97 aa6.63□□□□□ -1.35
SYNE1-211ENST00000413186 IGKV2-40A0A087WW87 121 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-211ENST00000413186 IGKV2D-40P01614 121 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-211ENST00000413186 HILS1P60008 231 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 Q0VG73 95 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 ETDBQ3ZM63 59 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 ST20Q9HBF5 79 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 E7EUB6 86 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 TEN1Q86WV5 123 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 AKAP9Q99996 3911 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 M0R381 172 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 C9orf66Q5T8R8 295 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 C4orf3Q8WVX3 66 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 CD7P09564 240 aa6.62□□□□□ -1.35
SYNE1-211ENST00000413186 RAI1Q7Z5J4 1906 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-211ENST00000413186 TINCRA0A1B0GVN0 87 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 AZU1P20160 251 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 FAM104BQ5XKR9 115 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 DMXL1Q9Y485 3027 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 UBE2AP49459 152 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 Q86TA4 180 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 JMJD1CQ15652 2540 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 ANKRD17O75179 2603 aaKnown RBP6.61□□□□□ -1.35
SYNE1-211ENST00000413186 AVPP01185 164 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 UBE2V1Q13404 147 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 POLQO75417 2590 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 NBPF19A0A087WUL8 3843 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 HLA-DRB4P13762 266 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 Q6ZSV7 163 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 HLA-DRB4X5D2U9 266 aa6.61□□□□□ -1.35
SYNE1-211ENST00000413186 PMAIP1Q13794 54 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 DEFB136Q30KP8 78 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 MUC21Q5SSG8 566 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 CASC2Q6XLA1 102 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 NUP35Q8NFH5 326 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 MRPL53Q96EL3 112 aaKnown RBP6.6□□□□□ -1.35
SYNE1-211ENST00000413186 PYGO2Q9BRQ0 406 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 PLA2G2EQ9NZK7 142 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 IGHV4OR15-8A0A075B7B6 117 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 A0A087WW49 117 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 MUC21A0A0G2JKD1 596 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 MUC21A0A140T8X8 626 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 MORN5Q5VZ52 161 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 RASL10AQ92737 203 aa6.6□□□□□ -1.35
SYNE1-211ENST00000413186 SLURP1P55000 103 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 NDUFA11Q86Y39 141 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 OVOL2Q9BRP0 275 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 TRGV2A0A075B6R0 118 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 WI2-2373I1.2A0A1W2PRP0 233 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 FXYD5Q96DB9 178 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 SORL1Q92673 2214 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 INSL3P51460 131 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 IGFL4Q6B9Z1 124 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 SMIM2Q9BVW6 85 aa6.59□□□□□ -1.35
SYNE1-211ENST00000413186 FLNBO75369 2602 aaKnown RBP6.59□□□□□ -1.36
SYNE1-211ENST00000413186 LINC01548A6NM66 108 aa6.59□□□□□ -1.36
SYNE1-211ENST00000413186 C16orf54Q6UWD8 224 aa6.59□□□□□ -1.36
SYNE1-211ENST00000413186 C15orf53Q8NAA6 179 aa6.59□□□□□ -1.36
SYNE1-211ENST00000413186 F5H768 121 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 RPL35AP18077 110 aaKnown RBP6.58□□□□□ -1.36
SYNE1-211ENST00000413186 DEFB121Q5J5C9 76 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 V9GYV3 84 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 SMIM27A0A1W2PRY6 76 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 APOC4P55056 127 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 PLXNB1O43157 2135 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 Q8TAT8 98 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 C2orf70A6NJV1 201 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 FOXI2Q6ZQN5 318 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 RNF183Q96D59 192 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 DSCR8Q96T75 97 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 LENEPQ9Y5L5 61 aa6.58□□□□□ -1.36
SYNE1-211ENST00000413186 SYS1-DBNDD2H3BUS1 97 aa6.57□□□□□ -1.36
SYNE1-211ENST00000413186 SLC25A29Q8N8R3 303 aa6.57□□□□□ -1.36
SYNE1-211ENST00000413186 ZNF702PQ9H963 129 aa6.57□□□□□ -1.36
SYNE1-211ENST00000413186 G3V4G9 280 aa6.57□□□□□ -1.36
SYNE1-211ENST00000413186 COA6Q5JTJ3 125 aaKnown RBP6.57□□□□□ -1.36
SYNE1-211ENST00000413186 NDUFA7O95182 113 aa6.57□□□□□ -1.36
SYNE1-211ENST00000413186 WIPF2Q8TF74 440 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-211ENST00000413186 HCFC1P51610 2035 aa6.57□□□□□ -1.36
SYNE1-211ENST00000413186 MRPL36Q9P0J6 103 aaKnown RBP6.56□□□□□ -1.36
SYNE1-211ENST00000413186 USP24Q9UPU5 2620 aa6.56□□□□□ -1.36
SYNE1-211ENST00000413186 IGKV1OR2-108A0A075B7D4 117 aa6.56□□□□□ -1.36
SYNE1-211ENST00000413186 SH2D1AO60880 128 aa6.56□□□□□ -1.36
SYNE1-211ENST00000413186 PYY3Q5JQD4 70 aa6.56□□□□□ -1.36
SYNE1-211ENST00000413186 SHISA2Q6UWI4 295 aa6.56□□□□□ -1.36
SYNE1-211ENST00000413186 PATE2Q6UY27 113 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms