RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ZNF747Q9BV97 191 aa8.59□□□□□ -1.03
PTPRF-204ENST00000412568 DKK2Q9UBU2 259 aa8.59□□□□□ -1.03
PTPRF-204ENST00000412568 A0A1W2PPM0 123 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 M0R2P5 195 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 TNFRSF13BO14836 293 aaPredicted RBP8.58□□□□□ -1.04
PTPRF-204ENST00000412568 PCP2Q8IVA1 136 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 DEFB125Q8N687 156 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 MRPL35Q9NZE8 188 aaKnown RBP8.58□□□□□ -1.04
PTPRF-204ENST00000412568 NBEAQ8NFP9 2946 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 SDHAF1A6NFY7 115 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE7O76087 117 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE12FP0CL80 117 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE12GP0CL81 117 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE12IP0CL82 117 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 C16orf54Q6UWD8 224 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 C2orf82Q6UX34 121 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 C19orf71A6NCJ1 209 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 AZU1P20160 251 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 DEFB121Q5J5C9 76 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 BBC3Q96PG8 261 aaPredicted RBP8.58□□□□□ -1.04
PTPRF-204ENST00000412568 TRAV13-1A0A0B4J241 112 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 LGALS9BQ3B8N2 356 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 LGALS9CQ6DKI2 356 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 C2orf66Q6UXQ4 117 aa8.58□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE12HA6NDE8 117 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 H3BUA1 57 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 ZNF80P51504 273 aaPredicted RBP8.57□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE12JA6NER3 117 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 TMEM238C9JI98 176 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 IGF1P05019 195 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE4Q13068 117 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 GAGE5Q13069 117 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 TP53TG1Q9Y2A0 90 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 RNASE13Q5GAN3 156 aaKnown RBP8.57□□□□□ -1.04
PTPRF-204ENST00000412568 Q8N8P6 123 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 MLST8Q9BVC4 326 aa8.57□□□□□ -1.04
PTPRF-204ENST00000412568 C11orf68Q9H3H3 251 aaKnown RBP8.57□□□□□ -1.04
PTPRF-204ENST00000412568 CFAP46Q8IYW2 2715 aa8.56□□□□□ -1.04
PTPRF-204ENST00000412568 RPL36AP83881 106 aaKnown RBP8.56□□□□□ -1.04
PTPRF-204ENST00000412568 RPL36ALQ969Q0 106 aaKnown RBP8.56□□□□□ -1.04
PTPRF-204ENST00000412568 IGHV4-31P0DP07 118 aa8.56□□□□□ -1.04
PTPRF-204ENST00000412568 ANKRD39Q53RE8 183 aa8.56□□□□□ -1.04
PTPRF-204ENST00000412568 ATXN8Q156A1 80 aa8.56□□□□□ -1.04
PTPRF-204ENST00000412568 SPXQ9BT56 116 aa8.56□□□□□ -1.04
PTPRF-204ENST00000412568 A0A096LPF7 62 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 TEX48A0A1B0GUV7 120 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 TMEM61Q8N0U2 210 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 RPL39LQ96EH5 51 aaKnown RBP8.55□□□□□ -1.04
PTPRF-204ENST00000412568 TRAV8-3A0A0A6YYJ7 113 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 C2orf70A6NJV1 201 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 MBD6Q96DN6 1003 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 CITED2Q99967 270 aaPredicted RBP8.55□□□□□ -1.04
PTPRF-204ENST00000412568 TP53TG3Q9ULZ0 132 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.55□□□□□ -1.04
PTPRF-204ENST00000412568 SH2D6Q7Z4S9 175 aa8.55□□□□□ -1.04
PTPRF-204ENST00000412568 ZNF625Q96I27 306 aaPredicted RBP8.55□□□□□ -1.04
PTPRF-204ENST00000412568 RAI1Q7Z5J4 1906 aaPredicted RBP8.55□□□□□ -1.04
PTPRF-204ENST00000412568 LOXL1Q08397 574 aaPredicted RBP8.54□□□□□ -1.04
PTPRF-204ENST00000412568 ZNRF2Q8NHG8 242 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 TTTY13Q9BZ97 58 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 ADARB2-AS1A8MUL3 147 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 SMIM2Q9BVW6 85 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 JPT2Q9H910 190 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 K7EMI3 77 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 EBI3Q14213 229 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 ATP6V0BQ99437 205 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 PRADC1Q9BSG0 188 aa8.54□□□□□ -1.04
PTPRF-204ENST00000412568 A0A1B0GXF2 115 aa8.53□□□□□ -1.04
PTPRF-204ENST00000412568 FSTL3O95633 263 aa8.53□□□□□ -1.04
PTPRF-204ENST00000412568 PLEKHB2Q96CS7 222 aa8.53□□□□□ -1.04
PTPRF-204ENST00000412568 A0A087WX48 190 aa8.53□□□□□ -1.04
PTPRF-204ENST00000412568 DNAJC9-AS1A6NH13 148 aa8.53□□□□□ -1.04
PTPRF-204ENST00000412568 F8W1H4 67 aa8.53□□□□□ -1.04
PTPRF-204ENST00000412568 C1QTNF4Q9BXJ3 329 aa8.52□□□□□ -1.04
PTPRF-204ENST00000412568 USP24Q9UPU5 2620 aa8.52□□□□□ -1.05
PTPRF-204ENST00000412568 F8P00451 2351 aa8.52□□□□□ -1.05
PTPRF-204ENST00000412568 RBAKDNA6NC62 111 aa8.52□□□□□ -1.05
PTPRF-204ENST00000412568 SPAG8Q99932 426 aaPredicted RBP8.52□□□□□ -1.05
PTPRF-204ENST00000412568 DMXL2Q8TDJ6 3036 aa8.52□□□□□ -1.05
PTPRF-204ENST00000412568 TAX1BP3O14907 124 aa8.52□□□□□ -1.05
PTPRF-204ENST00000412568 MYCNOSP40205 109 aa8.52□□□□□ -1.05
PTPRF-204ENST00000412568 PPDPFLQ8WWR9 84 aa8.52□□□□□ -1.05
PTPRF-204ENST00000412568 NOP10Q9NPE3 64 aaKnown RBP8.52□□□□□ -1.05
PTPRF-204ENST00000412568 Q8N1Y9 231 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 FOXI2Q6ZQN5 318 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 ZNF48Q96MX3 618 aaPredicted RBP8.51□□□□□ -1.05
PTPRF-204ENST00000412568 C12orf74Q32Q52 190 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 TRPT1Q86TN4 253 aaKnown RBP8.51□□□□□ -1.05
PTPRF-204ENST00000412568 GPHB5Q86YW7 130 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 SMAD5-AS1Q9Y6J3 95 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 MYMXA0A1B0GTQ4 84 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 F8VRH5 84 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 CEND1Q8N111 149 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 MRPL53Q96EL3 112 aaKnown RBP8.51□□□□□ -1.05
PTPRF-204ENST00000412568 ESM1Q9NQ30 184 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 MDFICQ9P1T7 246 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 U3KQE9 123 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 PTPRBP23467 1997 aa8.51□□□□□ -1.05
PTPRF-204ENST00000412568 CRIP1P50238 77 aa8.5□□□□□ -1.05
PTPRF-204ENST00000412568 LINC00158P58513 81 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms