RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 NDUFV3P56181 108 aaKnown RBP6.18□□□□□ -1.42
SYNE1-210ENST00000409694 G3V4G9 280 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 SP5Q6BEB4 398 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-210ENST00000409694 RIF1Q5UIP0 2472 aaKnown RBP6.18□□□□□ -1.42
SYNE1-210ENST00000409694 WI2-2373I1.2A0A1W2PRP0 233 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 G3V318 75 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.18□□□□□ -1.428e-9■■■□□ 18.3
SYNE1-210ENST00000409694 IGHV4OR15-8A0A075B7B6 117 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 A0A087WW49 117 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 A6NED7 52 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 PCP2Q8IVA1 136 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 NCOA6Q14686 2063 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-210ENST00000409694 A0A087WV48 116 aa6.18□□□□□ -1.42
SYNE1-210ENST00000409694 A0A0G2JRQ6 117 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 H7C423 109 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 Q0VFX4 171 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 C17orf58Q2M2W7 97 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 PCDH15Q96QU1 1955 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 Q6ZRM9 215 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 MED13Q9UHV7 2174 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 ZNF706Q9Y5V0 76 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-210ENST00000409694 Q6ZS92 163 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 E9PLD3 99 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 C16orf54Q6UWD8 224 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 SPAG11BQ08648 103 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 GP9P14770 177 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 WDR86Q86TI4 376 aa6.17□□□□□ -1.42
SYNE1-210ENST00000409694 IGLV10-54A0A075B6I4 117 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 KAAG1Q9UBP8 84 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 TNCP24821 2201 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 PLXNB1O43157 2135 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 WIPF3A6NGB9 483 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 GNRH2O43555 120 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 PRR30Q53SZ7 412 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-210ENST00000409694 IGHV3-30P01768 117 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 IGHV3-33P01772 117 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 IGHV3-30-3P0DP02 117 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 IGHV3-30-5P0DP03 117 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 WT1-ASQ06250 92 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 MIAQ16674 131 aa6.16□□□□□ -1.42
SYNE1-210ENST00000409694 TRAV23DV6A0A075B6W5 121 aa6.15□□□□□ -1.42
SYNE1-210ENST00000409694 B3GALT5-AS1P59052 145 aa6.15□□□□□ -1.42
SYNE1-210ENST00000409694 TMEM105Q8N8V8 129 aa6.15□□□□□ -1.42
SYNE1-210ENST00000409694 K7EN84 100 aa6.15□□□□□ -1.42
SYNE1-210ENST00000409694 MLANAQ16655 118 aa6.15□□□□□ -1.42
SYNE1-210ENST00000409694 UFSP1Q6NVU6 142 aa6.15□□□□□ -1.42
SYNE1-210ENST00000409694 FAM120AOSQ5T036 256 aa6.15□□□□□ -1.42
SYNE1-210ENST00000409694 GPHB5Q86YW7 130 aa6.15□□□□□ -1.43
SYNE1-210ENST00000409694 LOXP28300 417 aaPredicted RBP6.15□□□□□ -1.43
SYNE1-210ENST00000409694 NPBQ8NG41 125 aa6.15□□□□□ -1.43
SYNE1-210ENST00000409694 HIST2H2BDQ6DRA6 164 aa6.15□□□□□ -1.43
SYNE1-210ENST00000409694 RPL39LQ96EH5 51 aaKnown RBP6.15□□□□□ -1.43
SYNE1-210ENST00000409694 ZNF491Q8N8L2 437 aa6.15□□□□□ -1.43
SYNE1-210ENST00000409694 ZNF726P1Q15940 193 aa6.14□□□□□ -1.43
SYNE1-210ENST00000409694 MRPS36P82909 103 aaKnown RBP6.14□□□□□ -1.43
SYNE1-210ENST00000409694 TMEM263Q8WUH6 116 aaKnown RBP6.14□□□□□ -1.43
SYNE1-210ENST00000409694 DSCAML1Q8TD84 2053 aa6.14□□□□□ -1.43
SYNE1-210ENST00000409694 MDFICQ9P1T7 246 aa6.14□□□□□ -1.43
SYNE1-210ENST00000409694 C4orf3Q8WVX3 66 aa6.14□□□□□ -1.43
SYNE1-210ENST00000409694 IGFL3Q6UXB1 125 aa6.14□□□□□ -1.43
SYNE1-210ENST00000409694 CLEC2BQ92478 149 aa6.14□□□□□ -1.43
SYNE1-210ENST00000409694 ROS1P08922 2347 aa6.14□□□□□ -1.43
SYNE1-210ENST00000409694 C15orf65H3BRN8 121 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 PLCE1Q9P212 2302 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 INSL3P51460 131 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 RNF138Q8WVD3 245 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 IGKV1-6A0A0C4DH72 117 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 TMEM89A2RUT3 159 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 NDUFA11Q86Y39 141 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 IMUPQ9GZP8 106 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 USF3Q68DE3 2245 aa6.13□□□□□ -1.43
SYNE1-210ENST00000409694 CTRLP40313 264 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 LINC00205P59089 165 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 BLCAPP62952 87 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 MIR7-3HGQ8N6C7 128 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 C7orf33Q8WU49 177 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 TRBV10-1A0A0K0K1A3 114 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 K7ENP7 123 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 LTBP1Q14766 1721 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 AGPAT4-IT1Q9H0P7 198 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 IGKV2D-26A0A0A0MRZ7 120 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 A0A0U1RQV1 116 aa6.12□□□□□ -1.43
SYNE1-210ENST00000409694 AGRNO00468 2067 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 COA6Q5JTJ3 125 aaKnown RBP6.11□□□□□ -1.43
SYNE1-210ENST00000409694 ALPK3Q96L96 1907 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 ATG2AQ2TAZ0 1938 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 WISP1O95388 367 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 ASPHD1Q5U4P2 390 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 FAM19A3Q7Z5A8 133 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 Q8N9L7 120 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 LYPD6BQ8NI32 183 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 RETNQ9HD89 108 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 PIK3CD-AS1Q5SR53 167 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 WFDC10BQ8IUB3 73 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 DSCAMO60469 2012 aa6.11□□□□□ -1.43
SYNE1-210ENST00000409694 GATA1P15976 413 aaPredicted RBP6.11□□□□□ -1.43
SYNE1-210ENST00000409694 TRBV6-1A0A0K0K1D8 114 aa6.1□□□□□ -1.43
SYNE1-210ENST00000409694 LY6HO94772 140 aa6.1□□□□□ -1.43
SYNE1-210ENST00000409694 UBE2D2P62837 147 aa6.1□□□□□ -1.43
SYNE1-210ENST00000409694 DAND5Q8N907 189 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms