RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 CLRN3Q8NCR9 226 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 C7orf77A4D0Y5 90 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 IGLL5B9A064 214 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 EVI2AP22794 236 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 CACNG7P62955 275 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 TWIST1Q15672 202 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 C14orf178Q8N769 122 aaPredicted RBP11.17□□□□□ -0.62
HMGA1-204ENST00000401473 NAT8BQ9UHF3 227 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 HHLA3Q9XRX5 114 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 KIF25-AS1Q9Y6Z4 181 aa11.17□□□□□ -0.62
HMGA1-204ENST00000401473 TRAV26-1A0A087WT03 109 aa11.16□□□□□ -0.62
HMGA1-204ENST00000401473 NUPR2A6NF83 97 aa11.16□□□□□ -0.62
HMGA1-204ENST00000401473 FAM3BP58499 235 aaPredicted RBP11.16□□□□□ -0.62
HMGA1-204ENST00000401473 FAM74A4Q5TZK3 123 aa11.16□□□□□ -0.62
HMGA1-204ENST00000401473 TMEM88Q6PEY1 159 aa11.16□□□□□ -0.62
HMGA1-204ENST00000401473 VSIG2Q96IQ7 327 aa11.16□□□□□ -0.62
HMGA1-204ENST00000401473 TRGV4A0A0C4DH28 118 aa11.15□□□□□ -0.62
HMGA1-204ENST00000401473 A0A0J9YY99 117 aa11.15□□□□□ -0.62
HMGA1-204ENST00000401473 LINC00315P59091 139 aa11.15□□□□□ -0.62
HMGA1-204ENST00000401473 A0A1B0GUT8 65 aa11.15□□□□□ -0.63
HMGA1-204ENST00000401473 CRYBA4P53673 196 aa11.15□□□□□ -0.63
HMGA1-204ENST00000401473 ZFP2Q6ZN57 461 aa11.15□□□□□ -0.63
HMGA1-204ENST00000401473 Q9UF83 564 aa11.15□□□□□ -0.63
HMGA1-204ENST00000401473 PRO0255Q9UI72 69 aa11.15□□□□□ -0.63
HMGA1-204ENST00000401473 GATA1P15976 413 aaPredicted RBP11.14□□□□□ -0.63
HMGA1-204ENST00000401473 SVBPQ8N300 66 aa11.14□□□□□ -0.63
HMGA1-204ENST00000401473 SLC25A29Q8N8R3 303 aa11.14□□□□□ -0.63
HMGA1-204ENST00000401473 CIDEAO60543 219 aa11.13□□□□□ -0.63
HMGA1-204ENST00000401473 CTDSP1Q9GZU7 261 aa11.13□□□□□ -0.63
HMGA1-204ENST00000401473 RPS10P5Q9NQ39 176 aa11.13□□□□□ -0.63
HMGA1-204ENST00000401473 KLK5Q9Y337 293 aaPredicted RBP11.13□□□□□ -0.63
HMGA1-204ENST00000401473 RHEBQ15382 184 aa11.12□□□□□ -0.63
HMGA1-204ENST00000401473 ATRAIDQ6UW56 229 aa11.12□□□□□ -0.63
HMGA1-204ENST00000401473 AP1S3Q96PC3 154 aa11.12□□□□□ -0.63
HMGA1-204ENST00000401473 TMEM242Q9NWH2 141 aa11.12□□□□□ -0.63
HMGA1-204ENST00000401473 A0A087WWC5 75 aa11.12□□□□□ -0.63
HMGA1-204ENST00000401473 SLAQ13239 276 aa11.12□□□□□ -0.63
HMGA1-204ENST00000401473 APLNQ9ULZ1 77 aa11.12□□□□□ -0.63
HMGA1-204ENST00000401473 LOC100131303A0A0U1RQF7 123 aa11.11□□□□□ -0.63
HMGA1-204ENST00000401473 PAX4O43316 350 aa11.11□□□□□ -0.63
HMGA1-204ENST00000401473 FAM210BQ96KR6 192 aa11.11□□□□□ -0.63
HMGA1-204ENST00000401473 KMT2AQ03164 3969 aa11.11□□□□□ -0.63
HMGA1-204ENST00000401473 TRBV6-4A0A1B0GX49 114 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 RHODO00212 210 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 SNAPINO95295 136 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 TRGC1P0CF51 173 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 BORCS7Q96B45 105 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 SACSQ9NZJ4 4579 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 P0DMU3 169 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 FAM231AP0DMU4 169 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 FAM231CP0DMU5 169 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 MRPL54Q6P161 138 aaKnown RBP11.1□□□□□ -0.63
HMGA1-204ENST00000401473 IMMP2LQ96T52 175 aa11.1□□□□□ -0.63
HMGA1-204ENST00000401473 H3BNG1 76 aa11.09□□□□□ -0.63
HMGA1-204ENST00000401473 SMIM17P0DL12 118 aa11.09□□□□□ -0.63
HMGA1-204ENST00000401473 RIGQ13278 110 aa11.09□□□□□ -0.63
HMGA1-204ENST00000401473 DPH3P1Q9H4G8 78 aa11.09□□□□□ -0.63
HMGA1-204ENST00000401473 URGCP-MRPS24S4R325 110 aa11.09□□□□□ -0.63
HMGA1-204ENST00000401473 A0A096LPF7 62 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 A0A1B0GXF2 115 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 NUDT3O95989 172 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 CAMPP49913 170 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 RAB4BP61018 213 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 ZNF56Q15929 161 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 DNAH1Q9P2D7 4330 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 VPS13DQ5THJ4 4388 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 F5H697 171 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 K7EQD1 137 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 GYPEP15421 78 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 TMEM191AQ9H0A3 160 aa11.08□□□□□ -0.64
HMGA1-204ENST00000401473 MGPP08493 103 aa11.07□□□□□ -0.64
HMGA1-204ENST00000401473 RHOHQ15669 191 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 C15orf53Q8NAA6 179 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 RNF185Q96GF1 192 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 TRAV26-2A0A0B4J265 109 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 M0QY20 66 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 TCTAP57738 103 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 HBBP68871 147 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 SUMO4Q6EEV6 95 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 SMIM15Q7Z3B0 74 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 AMN1Q8IY45 258 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 BTF3L4Q96K17 158 aa11.06□□□□□ -0.64
HMGA1-204ENST00000401473 GAS8-AS1O95177 125 aa11.05□□□□□ -0.64
HMGA1-204ENST00000401473 RAB4AP20338 218 aa11.05□□□□□ -0.64
HMGA1-204ENST00000401473 ATP5L2Q7Z4Y8 100 aa11.05□□□□□ -0.64
HMGA1-204ENST00000401473 PRADC1Q9BSG0 188 aa11.05□□□□□ -0.64
HMGA1-204ENST00000401473 A0A1B0GW15 77 aa11.04□□□□□ -0.64
HMGA1-204ENST00000401473 KCNIP4Q6PIL6 250 aa11.04□□□□□ -0.64
HMGA1-204ENST00000401473 GATD1Q8NB37 220 aa11.04□□□□□ -0.64
HMGA1-204ENST00000401473 HYDINQ4G0P3 5121 aa11.04□□□□□ -0.64
HMGA1-204ENST00000401473 MRPL23Q16540 153 aaKnown RBP11.04□□□□□ -0.64
HMGA1-204ENST00000401473 ICOSQ9Y6W8 199 aa11.04□□□□□ -0.64
HMGA1-204ENST00000401473 GAGE12JA6NER3 117 aa11.03□□□□□ -0.64
HMGA1-204ENST00000401473 GAGE1Q13065 139 aa11.03□□□□□ -0.64
HMGA1-204ENST00000401473 GAGE4Q13068 117 aa11.03□□□□□ -0.64
HMGA1-204ENST00000401473 GAGE5Q13069 117 aa11.03□□□□□ -0.64
HMGA1-204ENST00000401473 GAGE13Q4V321 117 aa11.03□□□□□ -0.64
HMGA1-204ENST00000401473 FAM104BQ5XKR9 115 aa11.03□□□□□ -0.64
HMGA1-204ENST00000401473 NEXN-AS1Q8NBZ9 246 aa11.03□□□□□ -0.64
HMGA1-204ENST00000401473 RYR3Q15413 4870 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms