RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TNFRSF18Q9Y5U5 241 aa19.41■□□□□ 0.7
HMGB1-205ENST00000399494 HERC1Q15751 4861 aa19.4■□□□□ 0.7
HMGB1-205ENST00000399494 TMEM250H0YL14 139 aa19.4■□□□□ 0.7
HMGB1-205ENST00000399494 M0R381 172 aa19.4■□□□□ 0.7
HMGB1-205ENST00000399494 CXCL1P09341 107 aa19.4■□□□□ 0.7
HMGB1-205ENST00000399494 DMRTA1Q5VZB9 504 aa19.4■□□□□ 0.7
HMGB1-205ENST00000399494 K7EQD1 137 aa19.39■□□□□ 0.69
HMGB1-205ENST00000399494 CEBPGP53567 150 aa19.39■□□□□ 0.69
HMGB1-205ENST00000399494 ZFP82Q8N141 532 aa19.39■□□□□ 0.69
HMGB1-205ENST00000399494 FAM210AQ96ND0 272 aa19.39■□□□□ 0.69
HMGB1-205ENST00000399494 PARLQ9H300 379 aa19.39■□□□□ 0.69
HMGB1-205ENST00000399494 XGP55808 180 aa19.38■□□□□ 0.69
HMGB1-205ENST00000399494 LYPD5Q6UWN5 251 aa19.38■□□□□ 0.69
HMGB1-205ENST00000399494 NEGR1Q7Z3B1 354 aa19.38■□□□□ 0.69
HMGB1-205ENST00000399494 EREGO14944 169 aa19.37■□□□□ 0.69
HMGB1-205ENST00000399494 PRADC1Q9BSG0 188 aa19.37■□□□□ 0.69
HMGB1-205ENST00000399494 JPT2Q9H910 190 aa19.37■□□□□ 0.69
HMGB1-205ENST00000399494 P01737 135 aa19.36■□□□□ 0.69
HMGB1-205ENST00000399494 ERVFC1-1P60608 527 aa19.36■□□□□ 0.69
HMGB1-205ENST00000399494 RHOHQ15669 191 aa19.36■□□□□ 0.69
HMGB1-205ENST00000399494 ZFP2Q6ZN57 461 aa19.36■□□□□ 0.69
HMGB1-205ENST00000399494 SLC25A29Q8N8R3 303 aa19.36■□□□□ 0.69
HMGB1-205ENST00000399494 OR2D3Q8NGH3 330 aa19.36■□□□□ 0.69
HMGB1-205ENST00000399494 LOC100131303A0A0U1RQF7 123 aa19.35■□□□□ 0.69
HMGB1-205ENST00000399494 TRBV6-4A0A1B0GX49 114 aa19.35■□□□□ 0.69
HMGB1-205ENST00000399494 RPS20P60866 119 aaKnown RBP19.35■□□□□ 0.69
HMGB1-205ENST00000399494 CDPF1Q6NVV7 123 aa19.35■□□□□ 0.69
HMGB1-205ENST00000399494 C19orf71A6NCJ1 209 aa19.34■□□□□ 0.69
HMGB1-205ENST00000399494 RHODO00212 210 aa19.34■□□□□ 0.69
HMGB1-205ENST00000399494 FAM74A4Q5TZK3 123 aa19.34■□□□□ 0.69
HMGB1-205ENST00000399494 NFE4Q86UQ8 179 aa19.33■□□□□ 0.68
HMGB1-205ENST00000399494 OR10AG1Q8NH19 301 aa19.33■□□□□ 0.68
HMGB1-205ENST00000399494 SFRP2Q96HF1 295 aa19.33■□□□□ 0.68
HMGB1-205ENST00000399494 SAMD10Q9BYL1 202 aa19.33■□□□□ 0.68
HMGB1-205ENST00000399494 XKRY2A2RUG3 117 aa19.32■□□□□ 0.68
HMGB1-205ENST00000399494 SNAI2O43623 268 aa19.32■□□□□ 0.68
HMGB1-205ENST00000399494 OR5AL1P0C617 328 aa19.32■□□□□ 0.68
HMGB1-205ENST00000399494 INAFM2P0DMQ5 153 aa19.32■□□□□ 0.68
HMGB1-205ENST00000399494 SPANXN1Q5VSR9 72 aa19.32■□□□□ 0.68
HMGB1-205ENST00000399494 SH2D6Q7Z4S9 175 aa19.32■□□□□ 0.68
HMGB1-205ENST00000399494 OCC1Q8TAD7 63 aa19.32■□□□□ 0.68
HMGB1-205ENST00000399494 A0A087WWL8 130 aa19.31■□□□□ 0.68
HMGB1-205ENST00000399494 TPPP3Q9BW30 176 aa19.31■□□□□ 0.68
HMGB1-205ENST00000399494 A0A087WTM6 91 aa19.3■□□□□ 0.68
HMGB1-205ENST00000399494 MUC21A0A0G2JKD1 596 aa19.3■□□□□ 0.68
HMGB1-205ENST00000399494 MUC21A0A140T8X8 626 aa19.3■□□□□ 0.68
HMGB1-205ENST00000399494 NDUFS6O75380 124 aaKnown RBP19.3■□□□□ 0.68
HMGB1-205ENST00000399494 GZMBP10144 247 aa19.3■□□□□ 0.68
HMGB1-205ENST00000399494 SSBP4Q9BWG4 385 aaPredicted RBP19.3■□□□□ 0.68
HMGB1-205ENST00000399494 DNAH10OSP0CZ25 163 aa19.29■□□□□ 0.68
HMGB1-205ENST00000399494 KRTAP10-1P60331 282 aa19.29■□□□□ 0.68
HMGB1-205ENST00000399494 SSTP61278 116 aa19.29■□□□□ 0.68
HMGB1-205ENST00000399494 FER1L6-AS1Q8NA97 138 aa19.29■□□□□ 0.68
HMGB1-205ENST00000399494 SMIM7Q9BQ49 75 aa19.29■□□□□ 0.68
HMGB1-205ENST00000399494 FAT1Q14517 4588 aa19.29■□□□□ 0.68
HMGB1-205ENST00000399494 TRAV9-2A0A087WT02 112 aa19.28■□□□□ 0.68
HMGB1-205ENST00000399494 K7EN84 100 aa19.28■□□□□ 0.68
HMGB1-205ENST00000399494 UFSP1Q6NVU6 142 aa19.28■□□□□ 0.68
HMGB1-205ENST00000399494 NUDT10Q8NFP7 164 aa19.28■□□□□ 0.68
HMGB1-205ENST00000399494 NUDT11Q96G61 164 aa19.28■□□□□ 0.68
HMGB1-205ENST00000399494 LY96Q9Y6Y9 160 aa19.28■□□□□ 0.68
HMGB1-205ENST00000399494 SRP19P09132 144 aaKnown RBP19.27■□□□□ 0.68
HMGB1-205ENST00000399494 Q6ZSN1 163 aa19.27■□□□□ 0.68
HMGB1-205ENST00000399494 RNASE7Q9H1E1 156 aaKnown RBP19.27■□□□□ 0.68
HMGB1-205ENST00000399494 ZNF727A8MUV8 499 aa19.25■□□□□ 0.67
HMGB1-205ENST00000399494 CRYGDP07320 174 aa19.25■□□□□ 0.67
HMGB1-205ENST00000399494 RPP21Q9H633 154 aaKnown RBP19.25■□□□□ 0.67
HMGB1-205ENST00000399494 VPS13BQ7Z7G8 4022 aa19.24■□□□□ 0.67
HMGB1-205ENST00000399494 K7EP13 123 aa19.24■□□□□ 0.67
HMGB1-205ENST00000399494 IGLC6P0CF74 106 aa19.24■□□□□ 0.67
HMGB1-205ENST00000399494 Q5VSD8 79 aa19.24■□□□□ 0.67
HMGB1-205ENST00000399494 WFDC10BQ8IUB3 73 aa19.24■□□□□ 0.67
HMGB1-205ENST00000399494 MSRB1Q9NZV6 116 aa19.24■□□□□ 0.67
HMGB1-205ENST00000399494 C14orf178Q8N769 122 aaPredicted RBP19.23■□□□□ 0.67
HMGB1-205ENST00000399494 GAGE12JA6NER3 117 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 SMIM17P0DL12 118 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 CACNG7P62955 275 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 GAGE1Q13065 139 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 GAGE4Q13068 117 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 GAGE5Q13069 117 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 PEA15Q15121 130 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 ZNF56Q15929 161 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 GAGE13Q4V321 117 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 FRZBQ92765 325 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 AP1S3Q96PC3 154 aa19.22■□□□□ 0.67
HMGB1-205ENST00000399494 F2Z2F3 143 aa19.21■□□□□ 0.67
HMGB1-205ENST00000399494 ATP6V0E2Q8NHE4 81 aa19.21■□□□□ 0.67
HMGB1-205ENST00000399494 GATCO43716 136 aaKnown RBP19.2■□□□□ 0.66
HMGB1-205ENST00000399494 EVI2AP22794 236 aa19.2■□□□□ 0.66
HMGB1-205ENST00000399494 RAB14P61106 215 aa19.2■□□□□ 0.66
HMGB1-205ENST00000399494 DMBT1Q9UGM3 2413 aaPredicted RBP19.2■□□□□ 0.66
HMGB1-205ENST00000399494 LYZL1Q6UWQ5 148 aa19.19■□□□□ 0.66
HMGB1-205ENST00000399494 TIRAPP58753 221 aa19.18■□□□□ 0.66
HMGB1-205ENST00000399494 RAB4BP61018 213 aa19.18■□□□□ 0.66
HMGB1-205ENST00000399494 FAM231DQ6ZW35 169 aa19.18■□□□□ 0.66
HMGB1-205ENST00000399494 LINC01551Q86U37 167 aa19.18■□□□□ 0.66
HMGB1-205ENST00000399494 F5H697 171 aa19.17■□□□□ 0.66
HMGB1-205ENST00000399494 GCSHP23434 173 aa19.17■□□□□ 0.66
HMGB1-205ENST00000399494 FAM74A3Q4VXF1 159 aa19.17■□□□□ 0.66
HMGB1-205ENST00000399494 SMDT1Q9H4I9 107 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms