RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TRAV2A0A0B4J234 112 aa11.15□□□□□ -0.63
VPS9D1-201ENST00000389386 AMELXQ99217 191 aa11.15□□□□□ -0.63
VPS9D1-201ENST00000389386 LINC01587Q99440 93 aa11.15□□□□□ -0.63
VPS9D1-201ENST00000389386 AGPAT4-IT1Q9H0P7 198 aa11.15□□□□□ -0.63
VPS9D1-201ENST00000389386 RNF223E7ERA6 249 aa11.14□□□□□ -0.63
VPS9D1-201ENST00000389386 LGALS9O00182 355 aa11.14□□□□□ -0.63
VPS9D1-201ENST00000389386 TIMM23O14925 209 aa11.14□□□□□ -0.63
VPS9D1-201ENST00000389386 RNF182Q8N6D2 247 aa11.14□□□□□ -0.63
VPS9D1-201ENST00000389386 RPL39LQ96EH5 51 aaKnown RBP11.14□□□□□ -0.63
VPS9D1-201ENST00000389386 RNF5Q99942 180 aa11.14□□□□□ -0.63
VPS9D1-201ENST00000389386 ATXN8Q156A1 80 aa11.14□□□□□ -0.63
VPS9D1-201ENST00000389386 ZNF462Q96JM2 2506 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 IGLV11-55A0A075B6I3 123 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 SMIM9A6NGZ8 99 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 EMP1P54849 157 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 MRPL23Q16540 153 aaKnown RBP11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 H7C2G1 150 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 WIPF1O43516 503 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 TSHBP01222 138 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 ADORA2A-AS1P86434 159 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 PAPPA-AS1Q5QFB9 102 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 CHCHD5Q9BSY4 110 aa11.13□□□□□ -0.63
VPS9D1-201ENST00000389386 TRBV10-2A0A0K0K1G8 114 aa11.12□□□□□ -0.63
VPS9D1-201ENST00000389386 DUSP14O95147 198 aaKnown RBP11.12□□□□□ -0.63
VPS9D1-201ENST00000389386 CD3EP07766 207 aa11.12□□□□□ -0.63
VPS9D1-201ENST00000389386 IGFBPL1Q8WX77 278 aa11.12□□□□□ -0.63
VPS9D1-201ENST00000389386 C21orf62Q9NYP8 219 aa11.12□□□□□ -0.63
VPS9D1-201ENST00000389386 IGHV3-23P01764 117 aa11.12□□□□□ -0.63
VPS9D1-201ENST00000389386 H3BMM0 161 aa11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 PRB1P04280 392 aa11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 UBE2WQ96B02 151 aa11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 IGHV3OR16-8A0A075B7F1 116 aa11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 A0A0B4J2C4 111 aa11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 CTSGP08311 255 aa11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 C14orf178Q8N769 122 aaPredicted RBP11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 USP9XQ93008 2570 aaPredicted RBP11.11□□□□□ -0.63
VPS9D1-201ENST00000389386 IGHV4-39P01824 125 aa11.1□□□□□ -0.63
VPS9D1-201ENST00000389386 CRYBG3Q68DQ2 2970 aa11.1□□□□□ -0.63
VPS9D1-201ENST00000389386 KAAG1Q9UBP8 84 aa11.1□□□□□ -0.63
VPS9D1-201ENST00000389386 DNAJC30Q96LL9 226 aa11.1□□□□□ -0.63
VPS9D1-201ENST00000389386 LOC107984640A0A0U1RRK4 108 aa11.09□□□□□ -0.63
VPS9D1-201ENST00000389386 J3QQQ9 107 aa11.09□□□□□ -0.63
VPS9D1-201ENST00000389386 LINC00694P0DN24 101 aa11.09□□□□□ -0.63
VPS9D1-201ENST00000389386 GNLYP22749 145 aa11.09□□□□□ -0.63
VPS9D1-201ENST00000389386 IGIPA6NJ69 53 aa11.09□□□□□ -0.63
VPS9D1-201ENST00000389386 PMVKQ15126 192 aa11.09□□□□□ -0.63
VPS9D1-201ENST00000389386 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.09□□□□□ -0.63
VPS9D1-201ENST00000389386 LY6LH3BQJ8 138 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 COX7A1P24310 79 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 SPRY2O43597 315 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 ZNF56Q15929 161 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 TMEM170BQ5T4T1 132 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 DPH3P1Q9H4G8 78 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 TRBV7-7A0A0K0K1E9 115 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 NBR2O15453 112 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 MUSTN1Q8IVN3 82 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 ZNRF2Q8NHG8 242 aa11.08□□□□□ -0.64
VPS9D1-201ENST00000389386 CENPEQ02224 2701 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 IGHV1-69DA0A0B4J2H0 117 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 IGHV3-35A0A0C4DH35 117 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 M0R381 172 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 Q1RN00 199 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 TRBV30A0A0K0K1B3 111 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 C2orf82Q6UX34 121 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 GPHB5Q86YW7 130 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 UBTD1Q9HAC8 227 aa11.07□□□□□ -0.64
VPS9D1-201ENST00000389386 FAM208BQ5VWN6 2430 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 FAM240AA0A1B0GVK7 77 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 LGALS3P17931 250 aaKnown RBP11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 BEX4Q9NWD9 120 aaPredicted RBP11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 TP53TG1Q9Y2A0 90 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 CHD6Q8TD26 2715 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 CELSR1Q9NYQ6 3014 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 H7C423 109 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 M0R2P5 195 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 BUB3O43684 328 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 TRIAP1O43715 76 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 BBC3Q96PG8 261 aaPredicted RBP11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 SPG11Q96JI7 2443 aa11.06□□□□□ -0.64
VPS9D1-201ENST00000389386 EBI3Q14213 229 aa11.05□□□□□ -0.64
VPS9D1-201ENST00000389386 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.05□□□□□ -0.64
VPS9D1-201ENST00000389386 PRR9Q5T870 116 aa11.05□□□□□ -0.64
VPS9D1-201ENST00000389386 C9orf47Q6ZRZ4 202 aa11.05□□□□□ -0.64
VPS9D1-201ENST00000389386 NPBQ8NG41 125 aa11.05□□□□□ -0.64
VPS9D1-201ENST00000389386 LRRK2Q5S007 2527 aa11.05□□□□□ -0.64
VPS9D1-201ENST00000389386 MGPP08493 103 aa11.04□□□□□ -0.64
VPS9D1-201ENST00000389386 DEFB121Q5J5C9 76 aa11.04□□□□□ -0.64
VPS9D1-201ENST00000389386 ZNF876PQ49A33 203 aa11.04□□□□□ -0.64
VPS9D1-201ENST00000389386 TMEM141Q96I45 108 aa11.04□□□□□ -0.64
VPS9D1-201ENST00000389386 DUX3Q96PT4 197 aa11.04□□□□□ -0.64
VPS9D1-201ENST00000389386 FAM19A5Q7Z5A7 132 aaPredicted RBP11.03□□□□□ -0.64
VPS9D1-201ENST00000389386 IGHV3-66A0A0C4DH42 116 aa11.03□□□□□ -0.64
VPS9D1-201ENST00000389386 PPP1R17O96001 155 aa11.03□□□□□ -0.64
VPS9D1-201ENST00000389386 RPL39P62891 51 aaKnown RBP11.03□□□□□ -0.64
VPS9D1-201ENST00000389386 NDPQ00604 133 aa11.03□□□□□ -0.64
VPS9D1-201ENST00000389386 VPS13CQ709C8 3753 aa11.03□□□□□ -0.64
VPS9D1-201ENST00000389386 H3BT86 120 aa11.02□□□□□ -0.64
VPS9D1-201ENST00000389386 POM121L12Q8N7R1 296 aa11.02□□□□□ -0.64
VPS9D1-201ENST00000389386 LEPROTO15243 131 aa11.02□□□□□ -0.65
VPS9D1-201ENST00000389386 MRPL53Q96EL3 112 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms