RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SPANXCQ9NY87 97 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 Q9UFV3 132 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 RALGAPA2Q2PPJ7 1873 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 DLEU1O43261 78 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 IGHV1-46P01743 117 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 LINC01465Q8N7H1 131 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 DCANP1Q8TF63 244 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 HELZP42694 1942 aaKnown RBP3.66□□□□□ -1.82
SCN1A-202ENST00000375405 YPEL1O60688 119 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 CXCL1P09341 107 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 NMSQ5H8A3 153 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 C7orf65Q6ZTY9 151 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 YPEL2Q96QA6 119 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 IGLV5-52A0A0A0MRZ9 124 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 NFE4Q86UQ8 179 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 LY6LH3BQJ8 138 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 J3QQQ9 107 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 PIN1P1O15428 100 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 C3orf79P0CE67 100 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 Q6ZQY7 126 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 HIVEP2P31629 2446 aa3.66□□□□□ -1.82
SCN1A-202ENST00000375405 UBR3Q6ZT12 1888 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 A0A087WV48 116 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 PLAC8L1A1L4L8 177 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 MPZP25189 248 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 DAZ2Q13117 558 aaKnown RBP3.65□□□□□ -1.82
SCN1A-202ENST00000375405 DAZ4Q86SG3 579 aaKnown RBP3.65□□□□□ -1.82
SCN1A-202ENST00000375405 SAP25Q8TEE9 199 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 DAZ3Q9NR90 486 aaKnown RBP3.65□□□□□ -1.82
SCN1A-202ENST00000375405 FBLN5Q9UBX5 448 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 COL22A1Q8NFW1 1626 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-202ENST00000375405 ASPHD1Q5U4P2 390 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 LINC00311Q8N616 119 aa3.65□□□□□ -1.82
SCN1A-202ENST00000375405 SBF1O95248 1867 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 LHFPL6Q9Y693 200 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 CXCL5P42830 114 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 DIAPH2-AS1Q14236 149 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 C1orf134Q5TEV5 83 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 RTBDNQ9BSG5 229 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-202ENST00000375405 ZNF236Q9UL36 1845 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 USP54Q70EL1 1684 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 ZNF462Q96JM2 2506 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 IGKV2D-30A0A075B6S6 120 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 IGHV6-1A0A0B4J1U7 121 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 FAM231BA6NCW3 169 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 RPL37AP8A6NKH3 93 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 IGKV2-30P06310 120 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 Q6ZVH6 145 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 CEND1Q8N111 149 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 WFDC1Q9HC57 220 aa3.65□□□□□ -1.83
SCN1A-202ENST00000375405 FAM120AOSQ5T036 256 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 SLC25A47Q6Q0C1 308 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 CLEC2BQ92478 149 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 IGLV8-61A0A075B6I0 122 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 C4orf51C9J302 202 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 J3QLI3 93 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BKO60814 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BJP06899 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BOP23527 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BBP33778 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BDP58876 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BCP62807 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST2H2BEQ16778 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BHQ93079 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BNQ99877 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIST1H2BMQ99879 126 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 WFDC10AQ9H1F0 79 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 SNURFQ9Y675 71 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 FOXL2NBQ6ZUU3 175 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 Q96M66 194 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 NHSQ6T4R5 1651 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 PLXNA1Q9UIW2 1896 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 IGKV1-8A0A0C4DH67 115 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 C5orf63A6NC05 138 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 LOXP28300 417 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-202ENST00000375405 MRPL27Q9P0M9 148 aaKnown RBP3.64□□□□□ -1.83
SCN1A-202ENST00000375405 DKK2Q9UBU2 259 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 hDV103S1A0JD37 113 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 TMEM223A0PJW6 202 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 DEFB113Q30KQ7 82 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 H0YGX0 51 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 GNRH2O43555 120 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 MIFP14174 115 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 TRGV9Q99603 122 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 SPRR3Q9UBC9 169 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 HIVEP3Q5T1R4 2406 aa3.64□□□□□ -1.83
SCN1A-202ENST00000375405 LOC100131303A0A0U1RQF7 123 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 F8W1H4 67 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 TIAF1O95411 115 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 C10orf25Q5T742 122 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 TMEM254Q8TBM7 123 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 SPATA31B1PQ5VZV4 182 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 SSBP3-AS1Q7Z2R9 100 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 C20orf197Q8N268 126 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 TRBV27A0A0K0K1C4 114 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 RBAKDNA6NC62 111 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 LGALS9BQ3B8N2 356 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 LGALS9CQ6DKI2 356 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 LYPD2Q6UXB3 125 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms