RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 OTOGLQ3ZCN5 2332 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 CRYGBP07316 175 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 GAGE6Q13070 117 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 C16orf54Q6UWD8 224 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 ZNRF2Q8NHG8 242 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 MRPL53Q96EL3 112 aaKnown RBP5.03□□□□□ -1.6
SMC1A-202ENST00000375340 PTPRQQ9UMZ3 2332 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 DEFB130BP0DP73 79 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 DEFB130AP0DP74 79 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 SMAD5-AS1Q9Y6J3 95 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 NCOR2Q9Y618 2525 aa5.03□□□□□ -1.6
SMC1A-202ENST00000375340 DSCR9P59020 149 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 FANCD2OSQ96PS1 177 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 LINC00574Q9H8X3 128 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 TLN2Q9Y4G6 2542 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 A0A096LPF7 62 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 RS1O15537 224 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 BLCAPP62952 87 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 TRBV6-1A0A0K0K1D8 114 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 MUSTN1Q8IVN3 82 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 PFN2P35080 140 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 S100A7L2Q5SY68 101 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 C9orf47Q6ZRZ4 202 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 Q8NA96 180 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 MLST8Q9BVC4 326 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 C5orf42Q9H799 3197 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 TRBV20-1A0A075B6N2 111 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 IFITM1P13164 125 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 AJUBAQ96IF1 538 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 GAGE7O76087 117 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 GAS8-AS1O95177 125 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 GAGE12FP0CL80 117 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 GAGE12GP0CL81 117 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 GAGE12IP0CL82 117 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 ANKRD29Q8N6D5 301 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 MYCNOSP40205 109 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 DEFB112Q30KQ8 113 aa5.02□□□□□ -1.61
SMC1A-202ENST00000375340 PIEZO1Q92508 2521 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 IGHV4-61A0A0C4DH41 118 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 HOXD3P31249 432 aaPredicted RBP5.01□□□□□ -1.61
SMC1A-202ENST00000375340 Q96MF0 132 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 C2CD3Q4AC94 2353 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 HIST2H2BDQ6DRA6 164 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 PTH2Q96A98 100 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 C15orf53Q8NAA6 179 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 NTN5Q8WTR8 489 aaPredicted RBP5.01□□□□□ -1.61
SMC1A-202ENST00000375340 IGKV2D-26A0A0A0MRZ7 120 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 Q8N1Y9 231 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 RNF185Q96GF1 192 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 ODF3BA8MYP8 253 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 TECTAO75443 2155 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 IGHV4-30-2A0A087WSY4 118 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 P0DMU3 169 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 FAM231AP0DMU4 169 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 FAM231CP0DMU5 169 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 SPTBN4Q9H254 2564 aa5.01□□□□□ -1.61
SMC1A-202ENST00000375340 CLEC2BQ92478 149 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 U3KQK5 164 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 Q6ZQT7 251 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 C2orf91Q6ZV80 131 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 MAPKAPK5-AS1Q8N8E1 139 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 C11orf86A6NJI1 115 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 RBX1P62877 108 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 CEMP1Q6PRD7 247 aaPredicted RBP5□□□□□ -1.61
SMC1A-202ENST00000375340 MDFICQ9P1T7 246 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 ICOSQ9Y6W8 199 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 NOP10Q9NPE3 64 aaKnown RBP5□□□□□ -1.61
SMC1A-202ENST00000375340 HIGD1BQ9P298 99 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 CFC1BP0CG36 223 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 CFC1P0CG37 223 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 SIRPDQ9H106 197 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 IGHV4OR15-8A0A075B7B6 117 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 A0A087WW49 117 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 TRAV12-1A0A0B4J245 112 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 SORL1Q92673 2214 aa5□□□□□ -1.61
SMC1A-202ENST00000375340 A4D1N5 150 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 Q9H8V8 135 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 U3KQE9 123 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 TMEM86BQ8N661 226 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 CEP350Q5VT06 3117 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 A0A0J9YXV3 536 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 SRSF2Q01130 221 aaKnown RBP4.99□□□□□ -1.61
SMC1A-202ENST00000375340 RHOHQ15669 191 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 C6orf226Q5I0X4 101 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 LAMTOR3Q9UHA4 124 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 TCL1BO95988 128 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 ZNF48Q96MX3 618 aaPredicted RBP4.99□□□□□ -1.61
SMC1A-202ENST00000375340 IGLC6P0CF74 106 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 NFE4Q86UQ8 179 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 URB1-AS1Q96HZ7 61 aa4.99□□□□□ -1.61
SMC1A-202ENST00000375340 LY6LH3BQJ8 138 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 NXPH4O95158 308 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 IGF2-ASQ6U949 168 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 SP5Q6BEB4 398 aaPredicted RBP4.98□□□□□ -1.61
SMC1A-202ENST00000375340 FOXI1Q12951 378 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 C9orf153Q5TBE3 101 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 TMEM243Q9BU79 118 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 TINCRA0A1B0GVN0 87 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 H3BUA1 57 aa4.98□□□□□ -1.61
SMC1A-202ENST00000375340 PRR9Q5T870 116 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms