RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 NDUFA4O00483 81 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 UCNP55089 124 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 PKD1L2Q7Z442 2459 aa9.14□□□□□ -0.95
CLIP3-201ENST00000360535 GAGE13Q4V321 117 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 OPRPNQ99935 248 aaPredicted RBP9.13□□□□□ -0.95
CLIP3-201ENST00000360535 IGHV4-4A0A075B6R2 117 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 KLK9Q9UKQ9 250 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 A0A1B0GV72 72 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 C11orf86A6NJI1 115 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 PSMB2P49721 201 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 ZNF56Q15929 161 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 PSMG4Q5JS54 123 aa9.13□□□□□ -0.95
CLIP3-201ENST00000360535 RRN3P1Q2M238 152 aa9.12□□□□□ -0.95
CLIP3-201ENST00000360535 NRGNQ92686 78 aa9.12□□□□□ -0.95
CLIP3-201ENST00000360535 TRBV7-3A0A075B6L6 115 aa9.12□□□□□ -0.95
CLIP3-201ENST00000360535 H7C2G1 150 aa9.12□□□□□ -0.95
CLIP3-201ENST00000360535 ATP5J2P56134 94 aa9.12□□□□□ -0.95
CLIP3-201ENST00000360535 MAPK1IP1LQ8NDC0 245 aa9.12□□□□□ -0.95
CLIP3-201ENST00000360535 C20orf78Q9BR46 151 aa9.12□□□□□ -0.95
CLIP3-201ENST00000360535 SUMO4Q6EEV6 95 aa9.11□□□□□ -0.95
CLIP3-201ENST00000360535 IGHV3-73A0A0B4J1V6 119 aa9.11□□□□□ -0.95
CLIP3-201ENST00000360535 TRAV12-1A0A0B4J245 112 aa9.11□□□□□ -0.95
CLIP3-201ENST00000360535 SOCS3O14543 225 aa9.11□□□□□ -0.95
CLIP3-201ENST00000360535 ZFP2Q6ZN57 461 aa9.11□□□□□ -0.95
CLIP3-201ENST00000360535 KIR2DL4Q99706 377 aa9.11□□□□□ -0.95
CLIP3-201ENST00000360535 DAZ1Q9NQZ3 744 aaKnown RBP9.11□□□□□ -0.95
CLIP3-201ENST00000360535 MDFICQ9P1T7 246 aa9.11□□□□□ -0.95
CLIP3-201ENST00000360535 SONP18583 2426 aaKnown RBP9.1□□□□□ -0.95
CLIP3-201ENST00000360535 SDHAF1A6NFY7 115 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 PIMREGQ9BSJ6 248 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 LENEPQ9Y5L5 61 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 IGHV4-30-2A0A087WSY4 118 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 GAGE12HA6NDE8 117 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 RNF223E7ERA6 249 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 SPINK13Q1W4C9 94 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 CCL19Q99731 98 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 SPAG8Q99932 426 aaPredicted RBP9.1□□□□□ -0.95
CLIP3-201ENST00000360535 SPANXB1Q9NS25 103 aaPredicted RBP9.1□□□□□ -0.95
CLIP3-201ENST00000360535 J3QR89 54 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 PTH2Q96A98 100 aa9.1□□□□□ -0.95
CLIP3-201ENST00000360535 CFAP46Q8IYW2 2715 aa9.09□□□□□ -0.95
CLIP3-201ENST00000360535 F8W1H4 67 aa9.09□□□□□ -0.95
CLIP3-201ENST00000360535 CRYGDP07320 174 aa9.09□□□□□ -0.95
CLIP3-201ENST00000360535 CKS1BP61024 79 aa9.09□□□□□ -0.95
CLIP3-201ENST00000360535 TAL2Q16559 108 aa9.09□□□□□ -0.95
CLIP3-201ENST00000360535 ANKRD17O75179 2603 aaKnown RBP9.09□□□□□ -0.95
CLIP3-201ENST00000360535 AVPP01185 164 aa9.09□□□□□ -0.95
CLIP3-201ENST00000360535 TSHBP01222 138 aa9.09□□□□□ -0.95
CLIP3-201ENST00000360535 MORN3Q6PF18 240 aaPredicted RBP9.09□□□□□ -0.95
CLIP3-201ENST00000360535 ABCA12Q86UK0 2595 aa9.09□□□□□ -0.96
CLIP3-201ENST00000360535 PRM2P04554 102 aa9.08□□□□□ -0.96
CLIP3-201ENST00000360535 SCGB1C2P0DMR2 95 aa9.08□□□□□ -0.96
CLIP3-201ENST00000360535 USMG5Q96IX5 58 aa9.08□□□□□ -0.96
CLIP3-201ENST00000360535 ATP6V0BQ99437 205 aa9.08□□□□□ -0.96
CLIP3-201ENST00000360535 IGHG2P01859 326 aa9.08□□□□□ -0.96
CLIP3-201ENST00000360535 ID1P41134 155 aa9.07□□□□□ -0.96
CLIP3-201ENST00000360535 HERVK_113P61574 105 aa9.07□□□□□ -0.96
CLIP3-201ENST00000360535 HIST2H2BDQ6DRA6 164 aa9.07□□□□□ -0.96
CLIP3-201ENST00000360535 C19orf54Q5BKX5 351 aa9.07□□□□□ -0.96
CLIP3-201ENST00000360535 EPG5Q9HCE0 2579 aa9.07□□□□□ -0.96
CLIP3-201ENST00000360535 TSPEAR-AS2P59090 65 aa9.07□□□□□ -0.96
CLIP3-201ENST00000360535 RAX2Q96IS3 184 aa9.07□□□□□ -0.96
CLIP3-201ENST00000360535 TRAV26-1A0A087WT03 109 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 TMEM238LA0A1B0GVL6 79 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 VCYO14598 125 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 IGHV4-59P01825 116 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 SYNJ2BPP57105 145 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 PMVKQ15126 192 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 RNASE13Q5GAN3 156 aaKnown RBP9.06□□□□□ -0.96
CLIP3-201ENST00000360535 LRRK2Q5S007 2527 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 ADARB2-AS1A8MUL3 147 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 IGLV4-69A0A075B6H9 119 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 A6NJY4 79 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 LINC00315P59091 139 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 Q8N1Y9 231 aa9.06□□□□□ -0.96
CLIP3-201ENST00000360535 A6NDX4 124 aa9.05□□□□□ -0.96
CLIP3-201ENST00000360535 KNCNA6PVL3 124 aa9.05□□□□□ -0.96
CLIP3-201ENST00000360535 TSPAN13O95857 204 aa9.05□□□□□ -0.96
CLIP3-201ENST00000360535 KLK9Q2XQG4 91 aa9.05□□□□□ -0.96
CLIP3-201ENST00000360535 ZNRF2Q8NHG8 242 aa9.05□□□□□ -0.96
CLIP3-201ENST00000360535 PPP1R17O96001 155 aa9.05□□□□□ -0.96
CLIP3-201ENST00000360535 LGALS3P17931 250 aaKnown RBP9.05□□□□□ -0.96
CLIP3-201ENST00000360535 KIF25-AS1Q9Y6Z4 181 aa9.05□□□□□ -0.96
CLIP3-201ENST00000360535 TRAV2A0A0B4J234 112 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 NDUFS8O00217 210 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 MSMBP08118 114 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 P0DMU3 169 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 FAM231AP0DMU4 169 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 FAM231CP0DMU5 169 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 ZNF876PQ49A33 203 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 IGIPA6NJ69 53 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 POLR2KP53803 58 aaKnown RBP9.04□□□□□ -0.96
CLIP3-201ENST00000360535 C10orf105Q8TEF2 133 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 DCANP1Q8TF63 244 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 DLX4Q92988 240 aaPredicted RBP9.04□□□□□ -0.96
CLIP3-201ENST00000360535 BEX4Q9NWD9 120 aaPredicted RBP9.04□□□□□ -0.96
CLIP3-201ENST00000360535 ZNF580Q9UK33 172 aa9.04□□□□□ -0.96
CLIP3-201ENST00000360535 A0A0J9YY99 117 aa9.03□□□□□ -0.96
CLIP3-201ENST00000360535 FAM19A4Q96LR4 140 aa9.03□□□□□ -0.96
CLIP3-201ENST00000360535 KLLNB2CW77 178 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms