RNA–Protein interactions for RNA: ENST00000343257.6

CLCN1-201, Transcript of chloride voltage-gated channel 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN1, Length 3,172 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1-201ENST00000343257 IGHV3-33P01772 117 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 CD3EP07766 207 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 GPHB5Q86YW7 130 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 COL6A6A6NMZ7 2263 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 BSNQ9UPA5 3926 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 C9orf47Q6ZRZ4 202 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 Q6ZSV7 163 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 B9A039 149 aa11.22□□□□□ -0.61
CLCN1-201ENST00000343257 GRNP28799 593 aaKnown RBP11.21□□□□□ -0.61
CLCN1-201ENST00000343257 RPL32P62910 135 aaKnown RBP11.21□□□□□ -0.61
CLCN1-201ENST00000343257 PRR30Q53SZ7 412 aaPredicted RBP11.21□□□□□ -0.61
CLCN1-201ENST00000343257 ZFAND2AQ8N6M9 145 aa11.21□□□□□ -0.62
CLCN1-201ENST00000343257 LINC01620Q4KN68 170 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 Q8N9W7 124 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 TRAV21A0A0B4J279 112 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 IGIPA6NJ69 53 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 MUC4Q99102 2169 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 TTC28Q96AY4 2481 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 OR10J6PQ8NGY7 276 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 DUX3Q96PT4 197 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 ODF3Q96PU9 254 aa11.2□□□□□ -0.62
CLCN1-201ENST00000343257 TMEM263Q8WUH6 116 aaKnown RBP11.19□□□□□ -0.62
CLCN1-201ENST00000343257 CELSR1Q9NYQ6 3014 aa11.19□□□□□ -0.62
CLCN1-201ENST00000343257 MEIG1Q5JSS6 88 aa11.19□□□□□ -0.62
CLCN1-201ENST00000343257 CHCHD5Q9BSY4 110 aa11.19□□□□□ -0.62
CLCN1-201ENST00000343257 SDHAF1A6NFY7 115 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 RNASE3P12724 160 aaKnown RBP11.18□□□□□ -0.62
CLCN1-201ENST00000343257 ZNF56Q15929 161 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 SUMO4Q6EEV6 95 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 AMELXQ99217 191 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 CFAP161Q6P656 301 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 C2orf82Q6UX34 121 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 UNQ9165/PRO28630Q6UXU0 137 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 TMEM219Q86XT9 240 aa11.18□□□□□ -0.62
CLCN1-201ENST00000343257 TLN1Q9Y490 2541 aaKnown RBP11.18□□□□□ -0.62
CLCN1-201ENST00000343257 SORL1Q92673 2214 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 TRBV12-3P01733 135 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 ATXN8Q156A1 80 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 LY6G5BQ8NDX9 201 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 A0A0J9YXV3 536 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 TRIAP1O43715 76 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 IGKV3-20P01619 116 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 RNASE13Q5GAN3 156 aaKnown RBP11.17□□□□□ -0.62
CLCN1-201ENST00000343257 FAM110DQ8TAY7 271 aaPredicted RBP11.17□□□□□ -0.62
CLCN1-201ENST00000343257 CLEC2BQ92478 149 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 SPXQ9BT56 116 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 OTOGLQ3ZCN5 2332 aa11.17□□□□□ -0.62
CLCN1-201ENST00000343257 SPTAN1Q13813 2472 aaKnown RBP11.16□□□□□ -0.62
CLCN1-201ENST00000343257 ODF3BA8MYP8 253 aa11.16□□□□□ -0.62
CLCN1-201ENST00000343257 IGHV3-11P01762 117 aa11.16□□□□□ -0.62
CLCN1-201ENST00000343257 IGHV3OR16-10A0A075B7F0 116 aa11.16□□□□□ -0.62
CLCN1-201ENST00000343257 H3BMM0 161 aa11.16□□□□□ -0.62
CLCN1-201ENST00000343257 PAPPA-AS1Q5QFB9 102 aa11.16□□□□□ -0.62
CLCN1-201ENST00000343257 EEF1AKMT3Q96AZ1 226 aa11.16□□□□□ -0.62
CLCN1-201ENST00000343257 UBE2WQ96B02 151 aa11.16□□□□□ -0.62
CLCN1-201ENST00000343257 FOXC1Q12948 553 aa11.15□□□□□ -0.62
CLCN1-201ENST00000343257 COL12A1Q99715 3063 aa11.15□□□□□ -0.62
CLCN1-201ENST00000343257 Q8N6K4 173 aa11.15□□□□□ -0.62
CLCN1-201ENST00000343257 LINC00477Q96M19 166 aa11.15□□□□□ -0.62
CLCN1-201ENST00000343257 MAP1AP78559 2803 aaPredicted RBP11.15□□□□□ -0.63
CLCN1-201ENST00000343257 A8MZ25 164 aa11.14□□□□□ -0.63
CLCN1-201ENST00000343257 IGFL3Q6UXB1 125 aa11.14□□□□□ -0.63
CLCN1-201ENST00000343257 ZFP36P26651 326 aaKnown RBP11.14□□□□□ -0.63
CLCN1-201ENST00000343257 ZNF876PQ49A33 203 aa11.14□□□□□ -0.63
CLCN1-201ENST00000343257 VCYO14598 125 aa11.14□□□□□ -0.63
CLCN1-201ENST00000343257 UBE2E1P51965 193 aa11.14□□□□□ -0.63
CLCN1-201ENST00000343257 TRAV8-3A0A0A6YYJ7 113 aa11.13□□□□□ -0.63
CLCN1-201ENST00000343257 TRAV12-3A0A0B4J271 114 aa11.13□□□□□ -0.63
CLCN1-201ENST00000343257 POLR2KP53803 58 aaKnown RBP11.13□□□□□ -0.63
CLCN1-201ENST00000343257 LINC00315P59091 139 aa11.13□□□□□ -0.63
CLCN1-201ENST00000343257 ZFHX2Q9C0A1 2572 aaPredicted RBP11.13□□□□□ -0.63
CLCN1-201ENST00000343257 C9orf139Q6ZV77 190 aa11.12□□□□□ -0.63
CLCN1-201ENST00000343257 TRBV10-2A0A0K0K1G8 114 aa11.12□□□□□ -0.63
CLCN1-201ENST00000343257 CEMP1Q6PRD7 247 aaPredicted RBP11.12□□□□□ -0.63
CLCN1-201ENST00000343257 DAND5Q8N907 189 aa11.12□□□□□ -0.63
CLCN1-201ENST00000343257 ITLN2Q8WWU7 325 aaPredicted RBP11.12□□□□□ -0.63
CLCN1-201ENST00000343257 IGHV1-69DA0A0B4J2H0 117 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 CENPVL3A0A0U1RRI6 287 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 TMEM141Q96I45 108 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 TMEM223A0PJW6 202 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 H7C423 109 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 LEPROTO15243 131 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 ZNF22P17026 224 aaPredicted RBP11.11□□□□□ -0.63
CLCN1-201ENST00000343257 EDN2P20800 178 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 MRPL53Q96EL3 112 aaKnown RBP11.11□□□□□ -0.63
CLCN1-201ENST00000343257 FAM110AQ9BQ89 295 aa11.11□□□□□ -0.63
CLCN1-201ENST00000343257 TRAV12-2A0A075B6T6 113 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 LGALS9O00182 355 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 KIF25-AS1Q9Y6Z4 181 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 IGHV3-73A0A0B4J1V6 119 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 A0A0J9YXY3 114 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 PPP1R17O96001 155 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 DEFB123Q8N688 67 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 M0R1W7 72 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 ADAMTSL4-AS1Q5T5F5 129 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 TIMM17AQ99595 171 aa11.1□□□□□ -0.63
CLCN1-201ENST00000343257 PRRC2AP48634 2157 aaKnown RBP11.09□□□□□ -0.63
CLCN1-201ENST00000343257 A0A0B4J2C4 111 aa11.09□□□□□ -0.63
CLCN1-201ENST00000343257 A0A0U1RRA0 63 aa11.09□□□□□ -0.63
CLCN1-201ENST00000343257 BRI3O95415 125 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms