RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 C11orf52Q96A22 123 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 ETV2O00321 342 aaPredicted RBP9.78□□□□□ -0.84
SDC3-201ENST00000336798 MYLKQ15746 1914 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 KIAA1671Q9BY89 1806 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 PRAC2D3DTV9 90 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 ZNF747Q9BV97 191 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 PRR20EP86478 221 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 PRR20CP86479 221 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 PRR20DP86480 221 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 PRR20BP86481 221 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 PRR20AP86496 221 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 KAAG1Q9UBP8 84 aa9.78□□□□□ -0.84
SDC3-201ENST00000336798 HIGD2BQ4VC39 106 aa9.77□□□□□ -0.84
SDC3-201ENST00000336798 GTSF1Q8WW33 167 aa9.77□□□□□ -0.84
SDC3-201ENST00000336798 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.77□□□□□ -0.85
SDC3-201ENST00000336798 ACYP1P07311 99 aa9.77□□□□□ -0.85
SDC3-201ENST00000336798 C11orf53Q8IXP5 236 aa9.77□□□□□ -0.85
SDC3-201ENST00000336798 NACAE9PAV3 2078 aa9.77□□□□□ -0.85
SDC3-201ENST00000336798 FNDC1Q4ZHG4 1894 aaPredicted RBP9.77□□□□□ -0.85
SDC3-201ENST00000336798 NDUFA1O15239 70 aa9.77□□□□□ -0.85
SDC3-201ENST00000336798 DAZ2Q13117 558 aaKnown RBP9.77□□□□□ -0.85
SDC3-201ENST00000336798 DAZ4Q86SG3 579 aaKnown RBP9.77□□□□□ -0.85
SDC3-201ENST00000336798 DAZ3Q9NR90 486 aaKnown RBP9.77□□□□□ -0.85
SDC3-201ENST00000336798 FRMPD3Q5JV73 1810 aa9.77□□□□□ -0.85
SDC3-201ENST00000336798 Q6ZUT4 128 aa9.77□□□□□ -0.85
SDC3-201ENST00000336798 OPRPNQ99935 248 aaPredicted RBP9.77□□□□□ -0.85
SDC3-201ENST00000336798 A0A0B4J2C4 111 aa9.76□□□□□ -0.85
SDC3-201ENST00000336798 TMEM61Q8N0U2 210 aa9.76□□□□□ -0.85
SDC3-201ENST00000336798 MPLKIPQ8TAP9 179 aa9.76□□□□□ -0.85
SDC3-201ENST00000336798 PTH2Q96A98 100 aa9.76□□□□□ -0.85
SDC3-201ENST00000336798 KLK5Q9Y337 293 aaPredicted RBP9.76□□□□□ -0.85
SDC3-201ENST00000336798 C2orf70A6NJV1 201 aa9.76□□□□□ -0.85
SDC3-201ENST00000336798 A4D1N5 150 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 PLA2G5P39877 138 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 CLEC2BQ92478 149 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 I3L2K1 104 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 C5orf56Q8N8D9 126 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 TTTY13Q9BZ97 58 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 PIP4P1Q86T03 277 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 TEN1Q86WV5 123 aa9.75□□□□□ -0.85
SDC3-201ENST00000336798 SPTSSBQ8NFR3 76 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 SMAD5-AS1Q9Y6J3 95 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 SPAG11BQ08648 103 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 HIST2H2BDQ6DRA6 164 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 THSD7BQ9C0I4 1608 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 K7EIM0 57 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 ADORA2A-AS1P86434 159 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 C1orf195Q5TG92 126 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 LECT2O14960 151 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 SEC61GP60059 68 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 CTSGP08311 255 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 EML6Q6ZMW3 1958 aa9.74□□□□□ -0.85
SDC3-201ENST00000336798 TRBV7-3A0A075B6L6 115 aa9.73□□□□□ -0.85
SDC3-201ENST00000336798 TRBV12-3P01733 135 aa9.73□□□□□ -0.85
SDC3-201ENST00000336798 IGKV4-1P06312 121 aa9.73□□□□□ -0.85
SDC3-201ENST00000336798 C10orf105Q8TEF2 133 aa9.73□□□□□ -0.85
SDC3-201ENST00000336798 TSC2P49815 1807 aa9.73□□□□□ -0.85
SDC3-201ENST00000336798 CEMP1Q6PRD7 247 aaPredicted RBP9.73□□□□□ -0.85
SDC3-201ENST00000336798 ZSWIM8A7E2V4 1837 aa9.73□□□□□ -0.85
SDC3-201ENST00000336798 FGF23Q9GZV9 251 aaPredicted RBP9.73□□□□□ -0.85
SDC3-201ENST00000336798 Q8N9W7 124 aa9.72□□□□□ -0.85
SDC3-201ENST00000336798 NOTCH3Q9UM47 2321 aa9.72□□□□□ -0.85
SDC3-201ENST00000336798 GPHB5Q86YW7 130 aa9.72□□□□□ -0.85
SDC3-201ENST00000336798 IGLV11-55A0A075B6I3 123 aa9.72□□□□□ -0.85
SDC3-201ENST00000336798 FXYD2P54710 66 aa9.71□□□□□ -0.85
SDC3-201ENST00000336798 COA6Q5JTJ3 125 aaKnown RBP9.71□□□□□ -0.85
SDC3-201ENST00000336798 IGKV2D-26A0A0A0MRZ7 120 aa9.71□□□□□ -0.85
SDC3-201ENST00000336798 MDFICQ9P1T7 246 aa9.71□□□□□ -0.86
SDC3-201ENST00000336798 DIRC1Q969H9 104 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 TNRC6BQ9UPQ9 1833 aaKnown RBP9.7□□□□□ -0.86
SDC3-201ENST00000336798 NCKAP5O14513 1909 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 P0DMU3 169 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 FAM231AP0DMU4 169 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 FAM231CP0DMU5 169 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 PATE2Q6UY27 113 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 HIGD2AQ9BW72 106 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 PLXNA3P51805 1871 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 MIR7-3HGQ8N6C7 128 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 FAM110AQ9BQ89 295 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 RLFQ13129 1914 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 CCDC179H3BU77 68 aa9.7□□□□□ -0.86
SDC3-201ENST00000336798 C4orf3Q8WVX3 66 aa9.69□□□□□ -0.86
SDC3-201ENST00000336798 PLCE1Q9P212 2302 aa9.69□□□□□ -0.86
SDC3-201ENST00000336798 B9D2Q9BPU9 175 aa9.69□□□□□ -0.86
SDC3-201ENST00000336798 SIRPDQ9H106 197 aa9.69□□□□□ -0.86
SDC3-201ENST00000336798 UNQ9165/PRO28630Q6UXU0 137 aa9.69□□□□□ -0.86
SDC3-201ENST00000336798 H0YGX0 51 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 IGKV1-17P01599 117 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 C11orf45Q8TAV5 145 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 LENEPQ9Y5L5 61 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 CRYGBP07316 175 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 C3orf22Q8N5N4 141 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 RNF152Q8N8N0 203 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 LGALS9O00182 355 aa9.68□□□□□ -0.86
SDC3-201ENST00000336798 DNAJC9-AS1A6NH13 148 aa9.67□□□□□ -0.86
SDC3-201ENST00000336798 TP53TG3Q9ULZ0 132 aa9.67□□□□□ -0.86
SDC3-201ENST00000336798 LINC01620Q4KN68 170 aa9.67□□□□□ -0.86
SDC3-201ENST00000336798 MYCNOSP40205 109 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 Q8N7P7 452 aa9.66□□□□□ -0.86
SDC3-201ENST00000336798 CHD3Q12873 2000 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms