RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 GGNQ86UU5 652 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 IGHV3-38A0A0C4DH36 116 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 RPL18AQ02543 176 aaKnown RBP4.89□□□□□ -1.63
CSMD1-201ENST00000335551 RNASE13Q5GAN3 156 aaKnown RBP4.89□□□□□ -1.63
CSMD1-201ENST00000335551 LINC01619G3V211 115 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 SLX1AQ9BQ83 275 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 XCL2Q9UBD3 114 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 MRPS36P82909 103 aaKnown RBP4.89□□□□□ -1.63
CSMD1-201ENST00000335551 HIST2H2BCQ6DN03 193 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 E9PLN8 166 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 CFHR3Q02985 330 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 TEX36Q5VZQ5 186 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 ZNF503Q96F45 646 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 C9orf47Q6ZRZ4 202 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 Q8NFD4 153 aa4.89□□□□□ -1.63
CSMD1-201ENST00000335551 BPY2O14599 106 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 LY6DQ14210 128 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 A0A0G2JRQ6 117 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 LECT2O14960 151 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 MT-ATP8P03928 68 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 NDUFA11Q86Y39 141 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 IGKV1-39P01597 117 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 IGKV1D-39P04432 117 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 USP24Q9UPU5 2620 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 COX7A2LO14548 114 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 IGHV4-4A0A075B6R2 117 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 CASC2Q6XLA1 102 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 IMUPQ9GZP8 106 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 DKK4Q9UBT3 224 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 SAA4P35542 130 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 CLEC2BQ92478 149 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 ATP6V0E1O15342 81 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 FAM120AOSQ5T036 256 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 CLPSL2Q6UWE3 100 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 Q8TCH9 128 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 TOMM6Q96B49 74 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 IGHV7-4-1A0A0J9YVY3 117 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 UNQ6494/PRO21346Q6UXR6 183 aa4.88□□□□□ -1.63
CSMD1-201ENST00000335551 ELANEP08246 267 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 WFDC11Q8NEX6 87 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 LINC01356Q8N9X3 169 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 C11orf86A6NJI1 115 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 H0Y9J4 135 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 LRRC75A-AS1Q8N1F1 130 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 H3BUA1 57 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 IGF2BP2-AS1Q96M15 143 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 USP9YO00507 2555 aaPredicted RBP4.87□□□□□ -1.63
CSMD1-201ENST00000335551 E9PLD3 99 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 ANKRD39Q53RE8 183 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 SERP2Q8N6R1 65 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 DIRC1Q969H9 104 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 C16orf54Q6UWD8 224 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 C20orf197Q8N268 126 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 TEX49A0A1B0GTD5 131 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 TCL1BO95988 128 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 CLPSP04118 112 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 CAMK2N2Q96S95 79 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 WI2-2373I1.2A0A1W2PRP0 233 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 TIMM17AQ99595 171 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 ANKRD11Q6UB99 2663 aaPredicted RBP4.87□□□□□ -1.63
CSMD1-201ENST00000335551 EPOPA6NHQ4 379 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.87□□□□□ -1.63
CSMD1-201ENST00000335551 IGKV2-29A2NJV5 120 aaPredicted RBP4.87□□□□□ -1.63
CSMD1-201ENST00000335551 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.87□□□□□ -1.63
CSMD1-201ENST00000335551 NDUFA1O15239 70 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 UBE2E1P51965 193 aa4.87□□□□□ -1.63
CSMD1-201ENST00000335551 IGHV1-58A0A0C4DH39 117 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 K7EQD1 137 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 SDIM1Q6ZPB5 146 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 IGHV1-69P01742 117 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 IGLC6P0CF74 106 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 TIMM17BO60830 172 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 LMO1P25800 156 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 BLCAPP62952 87 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 MIAQ16674 131 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 HIST2H2BDQ6DRA6 164 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 IGKV1-6A0A0C4DH72 117 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 LYNX1G3V0Z9 82 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 LYNX1P0DP58 116 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 LINC00311Q8N616 119 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 WISP1O95388 367 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 CD59P13987 128 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 TDRG1Q3Y452 100 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 C16orf74Q96GX8 76 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 IGKV2D-24A0A075B6R9 120 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 TEX22C9J3V5 150 aa4.86□□□□□ -1.63
CSMD1-201ENST00000335551 COX7BP24311 80 aa4.85□□□□□ -1.63
CSMD1-201ENST00000335551 RETNQ9HD89 108 aa4.85□□□□□ -1.63
CSMD1-201ENST00000335551 CTRLP40313 264 aa4.85□□□□□ -1.63
CSMD1-201ENST00000335551 ODF1Q14990 250 aa4.85□□□□□ -1.63
CSMD1-201ENST00000335551 BRD3OSQ6XYD6 125 aa4.85□□□□□ -1.63
CSMD1-201ENST00000335551 VPREB1P12018 145 aa4.85□□□□□ -1.63
CSMD1-201ENST00000335551 RPL39LQ96EH5 51 aaKnown RBP4.85□□□□□ -1.63
CSMD1-201ENST00000335551 NOP10Q9NPE3 64 aaKnown RBP4.85□□□□□ -1.63
CSMD1-201ENST00000335551 FGF23Q9GZV9 251 aaPredicted RBP4.85□□□□□ -1.63
CSMD1-201ENST00000335551 WT1-ASQ06250 92 aa4.85□□□□□ -1.63
CSMD1-201ENST00000335551 TRBV7-3A0A075B6L6 115 aa4.84□□□□□ -1.63
CSMD1-201ENST00000335551 FAM19A3Q7Z5A8 133 aa4.84□□□□□ -1.63
CSMD1-201ENST00000335551 FOXL2NBQ6ZUU3 175 aa4.84□□□□□ -1.63
CSMD1-201ENST00000335551 SEM1Q6ZVN7 128 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms