RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 TOMM6Q96B49 74 aa11.02□□□□□ -0.64
CLCNKA-201ENST00000331433 SCGB3A1Q96QR1 104 aa11.02□□□□□ -0.64
CLCNKA-201ENST00000331433 PTTG1IPP53801 180 aa11.02□□□□□ -0.65
CLCNKA-201ENST00000331433 FAM74A4Q5TZK3 123 aa11.02□□□□□ -0.65
CLCNKA-201ENST00000331433 SUMO4Q6EEV6 95 aa11.02□□□□□ -0.65
CLCNKA-201ENST00000331433 OR11H1Q8NG94 326 aa11.02□□□□□ -0.65
CLCNKA-201ENST00000331433 F5H697 171 aa11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 C2orf66Q6UXQ4 117 aa11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 C9orf85Q96MD7 179 aa11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 SETD2Q9BYW2 2564 aaPredicted RBP11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 IGHV1OR15-1A0A075B7D0 117 aa11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 KNCNA6PVL3 124 aa11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 AMTNQ6UX39 209 aa11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 FOXI2Q6ZQN5 318 aa11.01□□□□□ -0.65
CLCNKA-201ENST00000331433 UBE2V1Q13404 147 aa11□□□□□ -0.65
CLCNKA-201ENST00000331433 VAMP3Q15836 100 aa11□□□□□ -0.65
CLCNKA-201ENST00000331433 ACANP16112 2415 aa11□□□□□ -0.65
CLCNKA-201ENST00000331433 WNK1Q9H4A3 2382 aa11□□□□□ -0.65
CLCNKA-201ENST00000331433 LINC01619G3V211 115 aa11□□□□□ -0.65
CLCNKA-201ENST00000331433 SIVA1O15304 175 aa11□□□□□ -0.65
CLCNKA-201ENST00000331433 DUSP14O95147 198 aaKnown RBP11□□□□□ -0.65
CLCNKA-201ENST00000331433 PPP1R17O96001 155 aa11□□□□□ -0.65
CLCNKA-201ENST00000331433 DEFB131AP59861 70 aa10.99□□□□□ -0.65
CLCNKA-201ENST00000331433 K7EMI3 77 aa10.99□□□□□ -0.65
CLCNKA-201ENST00000331433 SEC11AP67812 179 aa10.99□□□□□ -0.65
CLCNKA-201ENST00000331433 HSD52Q0P140 79 aa10.99□□□□□ -0.65
CLCNKA-201ENST00000331433 RBMY1A1P0DJD3 496 aaKnown RBP10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 RBMY1CP0DJD4 496 aa10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 RBMY1FQ15415 496 aaKnown RBP10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 TMEM61Q8N0U2 210 aa10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 TRAV12-1A0A0B4J245 112 aa10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 F8VRH5 84 aa10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 NEXN-AS1Q8NBZ9 246 aa10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 KLHL30-AS1Q8NEE0 82 aa10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 C4orf3Q8WVX3 66 aa10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 DLX4Q92988 240 aaPredicted RBP10.98□□□□□ -0.65
CLCNKA-201ENST00000331433 H7C1H1 209 aa10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 HTN1P15515 57 aa10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 PLNP26678 52 aa10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 POLR2KP53803 58 aaKnown RBP10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 ITPR2Q14571 2701 aa10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 PLA2G2AP14555 144 aa10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 ZNF56Q15929 161 aa10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 BAALCQ8WXS3 180 aa10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 CHTOPQ9Y3Y2 248 aaKnown RBP10.97□□□□□ -0.65
CLCNKA-201ENST00000331433 TRAV8-6A0A0B4J262 113 aa10.96□□□□□ -0.65
CLCNKA-201ENST00000331433 SDHAF1A6NFY7 115 aa10.96□□□□□ -0.65
CLCNKA-201ENST00000331433 Q6ZSV7 163 aa10.96□□□□□ -0.65
CLCNKA-201ENST00000331433 SYT8Q8NBV8 401 aa10.96□□□□□ -0.65
CLCNKA-201ENST00000331433 HECTD1Q9ULT8 2610 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 MTORP42345 2549 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 TRBV25-1A0A075B6N4 114 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 CRYGDP07320 174 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 ZNF876PQ49A33 203 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 MAPKAPK5-AS1Q8N8E1 139 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 PEMTQ9UBM1 199 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 TP53TG1Q9Y2A0 90 aa10.96□□□□□ -0.66
CLCNKA-201ENST00000331433 RBMY1BA6NDE4 496 aaKnown RBP10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 RBMY1EA6NEQ0 496 aaKnown RBP10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 PRM2P04554 102 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 RBMY1DP0C7P1 496 aaKnown RBP10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 HLA-DRB4P13762 266 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 AMMECR1LQ6DCA0 310 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 ZFP2Q6ZN57 461 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 C11orf44Q8N8P7 122 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 HLA-DRB4X5D2U9 266 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 DNAJC9-AS1A6NH13 148 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 PRSS29PA6NIE9 313 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 K7EP13 123 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 RPL39P62891 51 aaKnown RBP10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 MORN3Q6PF18 240 aaPredicted RBP10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 CHAC1Q9BUX1 264 aa10.95□□□□□ -0.66
CLCNKA-201ENST00000331433 A6NDN8 102 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 H3BMM0 161 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 RPL32P62910 135 aaKnown RBP10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 CYSLTR1Q9Y271 337 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 ZNF256Q9Y2P7 627 aaPredicted RBP10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 PDZD2O15018 2839 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 M0QY20 66 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 VCYO14598 125 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 DYNLRB2Q8TF09 96 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 KIR2DL4Q99706 377 aa10.94□□□□□ -0.66
CLCNKA-201ENST00000331433 TSHBP01222 138 aa10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 GCSHP23434 173 aa10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 OR4C5Q8NGB2 326 aa10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 NAA38Q9BRA0 125 aaKnown RBP10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 ESM1Q9NQ30 184 aa10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 TRGV11A0A075B6L2 103 aa10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 TMEM86BQ8N661 226 aa10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 HIGD1BQ9P298 99 aa10.93□□□□□ -0.66
CLCNKA-201ENST00000331433 TRBV27A0A0K0K1C4 114 aa10.92□□□□□ -0.66
CLCNKA-201ENST00000331433 A0A1W2PRX2 142 aa10.92□□□□□ -0.66
CLCNKA-201ENST00000331433 RAB37Q96AX2 223 aa10.92□□□□□ -0.66
CLCNKA-201ENST00000331433 J3QKU1 62 aa10.92□□□□□ -0.66
CLCNKA-201ENST00000331433 FXYD2P54710 66 aa10.92□□□□□ -0.66
CLCNKA-201ENST00000331433 CD300EQ496F6 205 aaPredicted RBP10.92□□□□□ -0.66
CLCNKA-201ENST00000331433 MAP6D1Q9H9H5 199 aa10.92□□□□□ -0.66
CLCNKA-201ENST00000331433 TRBV6-5A0A0K0K1A5 114 aa10.91□□□□□ -0.66
CLCNKA-201ENST00000331433 IGIPA6NJ69 53 aa10.91□□□□□ -0.66
CLCNKA-201ENST00000331433 H3BRM9 83 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms