RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 PSMB2P49721 201 aa11.78□□□□□ -0.52
SHROOM1-201ENST00000319854 NRACQ8N912 160 aa11.77□□□□□ -0.52
SHROOM1-201ENST00000319854 MYMXA0A1B0GTQ4 84 aa11.77□□□□□ -0.53
SHROOM1-201ENST00000319854 LAGE3Q14657 143 aa11.77□□□□□ -0.53
SHROOM1-201ENST00000319854 SLC50A1Q9BRV3 221 aa11.77□□□□□ -0.53
SHROOM1-201ENST00000319854 LGALS1P09382 135 aaKnown RBP11.77□□□□□ -0.53
SHROOM1-201ENST00000319854 PRR9Q5T870 116 aa11.77□□□□□ -0.53
SHROOM1-201ENST00000319854 HIST2H2BDQ6DRA6 164 aa11.77□□□□□ -0.53
SHROOM1-201ENST00000319854 PRSS29PA6NIE9 313 aa11.76□□□□□ -0.53
SHROOM1-201ENST00000319854 UBR5O95071 2799 aaPredicted RBP11.76□□□□□ -0.53
SHROOM1-201ENST00000319854 LOC107984156A0A0G2JMH3 177 aa11.76□□□□□ -0.53
SHROOM1-201ENST00000319854 H3BVH4 76 aa11.76□□□□□ -0.53
SHROOM1-201ENST00000319854 TSPAN13O95857 204 aa11.76□□□□□ -0.53
SHROOM1-201ENST00000319854 DEFB112Q30KQ8 113 aa11.76□□□□□ -0.53
SHROOM1-201ENST00000319854 ARL17AQ8IVW1 177 aa11.76□□□□□ -0.53
SHROOM1-201ENST00000319854 B4DSR2 109 aa11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 FLNAP21333 2647 aaKnown RBP11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 NIPBLQ6KC79 2804 aaeCLIP11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 PLEKHB2Q96CS7 222 aa11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 FAM223BA6NKX1 122 aa11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 RNF223E7ERA6 249 aa11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 IGKV3-20P01619 116 aa11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 FAM223AQ8IWN6 122 aa11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 DLX4Q92988 240 aaPredicted RBP11.75□□□□□ -0.53
SHROOM1-201ENST00000319854 A6NDX4 124 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 OR11H12B2RN74 326 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 OR11H1Q8NG94 326 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 OR11H2Q8NH07 326 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 M0R381 172 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 IGHG2P01859 326 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 KRTAP10-9P60411 292 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 SPANXN1Q5VSR9 72 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 RHPN1-AS1Q9BWJ2 59 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 ITPR3Q14573 2671 aa11.74□□□□□ -0.53
SHROOM1-201ENST00000319854 PLNP26678 52 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 KIR2DL4Q99706 377 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 F8VRH5 84 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 LINC01559Q495D7 138 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 ATP6V0E2Q8NHE4 81 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 TMEM190Q8WZ59 177 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 ERG28Q9UKR5 140 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 H7C1H1 209 aa11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 RNASE4P34096 147 aaKnown RBP11.73□□□□□ -0.53
SHROOM1-201ENST00000319854 GPHB5Q86YW7 130 aa11.72□□□□□ -0.53
SHROOM1-201ENST00000319854 KLHL30-AS1Q8NEE0 82 aa11.72□□□□□ -0.53
SHROOM1-201ENST00000319854 C19orf54Q5BKX5 351 aa11.72□□□□□ -0.53
SHROOM1-201ENST00000319854 S100A4P26447 101 aaKnown RBP11.71□□□□□ -0.53
SHROOM1-201ENST00000319854 SRSF2Q01130 221 aaKnown RBP11.71□□□□□ -0.53
SHROOM1-201ENST00000319854 PRADC1Q9BSG0 188 aa11.71□□□□□ -0.53
SHROOM1-201ENST00000319854 OR10J6PQ8NGY7 276 aa11.71□□□□□ -0.54
SHROOM1-201ENST00000319854 U3KQE9 123 aa11.71□□□□□ -0.54
SHROOM1-201ENST00000319854 JMJD1CQ15652 2540 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 IGHV7-4-1A0A0J9YVY3 117 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 LINC01619G3V211 115 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 UBE2D1P51668 147 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 HERV-K104P63124 156 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 TCL1BO95988 128 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 COX6B1P14854 86 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 BEX4Q9NWD9 120 aaPredicted RBP11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 ITPR2Q14571 2701 aa11.7□□□□□ -0.54
SHROOM1-201ENST00000319854 ZNF815PA8K554 130 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 NDUFA4O00483 81 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 SLC25A16P16260 332 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 UBE2D3P61077 147 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 UBE2D2P62837 147 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 SCGB3A1Q96QR1 104 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 SRSF9Q13242 221 aaKnown RBP eCLIP11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 ANXA2RQ3ZCQ2 193 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 NEXN-AS1Q8NBZ9 246 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 PPDPFLQ8WWR9 84 aa11.69□□□□□ -0.54
SHROOM1-201ENST00000319854 TENM4Q6N022 2769 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 GNRH2O43555 120 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 CD7P09564 240 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 SCGB1D4Q6XE38 83 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 TEN1Q86WV5 123 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 HELZ2Q9BYK8 2649 aaKnown RBP11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 TRAV12-1A0A0B4J245 112 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 RBAKDNA6NC62 111 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 C9orf139Q6ZV77 190 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 RASL10AQ92737 203 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 ANAPC13Q9BS18 74 aa11.68□□□□□ -0.54
SHROOM1-201ENST00000319854 C9orf47Q6ZRZ4 202 aa11.67□□□□□ -0.54
SHROOM1-201ENST00000319854 USMG5Q96IX5 58 aa11.67□□□□□ -0.54
SHROOM1-201ENST00000319854 ZNF688P0C7X2 276 aa11.67□□□□□ -0.54
SHROOM1-201ENST00000319854 NHLRC4P0CG21 123 aaPredicted RBP11.67□□□□□ -0.54
SHROOM1-201ENST00000319854 SMIM2Q9BVW6 85 aa11.67□□□□□ -0.54
SHROOM1-201ENST00000319854 DAZ1Q9NQZ3 744 aaKnown RBP11.67□□□□□ -0.54
SHROOM1-201ENST00000319854 B5MCH6 92 aa11.66□□□□□ -0.54
SHROOM1-201ENST00000319854 MGPP08493 103 aa11.66□□□□□ -0.54
SHROOM1-201ENST00000319854 EMP1P54849 157 aa11.66□□□□□ -0.54
SHROOM1-201ENST00000319854 C14orf178Q8N769 122 aaPredicted RBP11.66□□□□□ -0.54
SHROOM1-201ENST00000319854 LINC01356Q8N9X3 169 aa11.66□□□□□ -0.54
SHROOM1-201ENST00000319854 BAALCQ8WXS3 180 aa11.66□□□□□ -0.54
SHROOM1-201ENST00000319854 RPL39LQ96EH5 51 aaKnown RBP11.66□□□□□ -0.54
SHROOM1-201ENST00000319854 HIST2H2BCQ6DN03 193 aa11.65□□□□□ -0.54
SHROOM1-201ENST00000319854 NDUFA11Q86Y39 141 aa11.65□□□□□ -0.54
SHROOM1-201ENST00000319854 ANKRD29Q8N6D5 301 aa11.65□□□□□ -0.54
SHROOM1-201ENST00000319854 SYNJ2BPP57105 145 aa11.65□□□□□ -0.54
SHROOM1-201ENST00000319854 ZFAND2AQ8N6M9 145 aa11.65□□□□□ -0.54
SHROOM1-201ENST00000319854 TOMM6Q96B49 74 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms