RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 FAM223AQ8IWN6 122 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 MRPL53Q96EL3 112 aaKnown RBP8□□□□□ -1.13
COL3A1-202ENST00000317840 TM2D2Q9BX73 214 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 TP53TG1Q9Y2A0 90 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 LINC01549A6NIU2 74 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 PPP1R17O96001 155 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 ID1P41134 155 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 Q1RN00 199 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 C10orf105Q8TEF2 133 aa8□□□□□ -1.13
COL3A1-202ENST00000317840 IGHV3-64A0A075B6Q5 118 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 DUSP14O95147 198 aaKnown RBP7.99□□□□□ -1.13
COL3A1-202ENST00000317840 IGHV4-59P01825 116 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 ZNF688P0C7X2 276 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 ZMAT4Q9H898 229 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 F8W1H4 67 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 HIST2H2BDQ6DRA6 164 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 RASL10AQ92737 203 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 DCHS2Q6V1P9 2916 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 IGLV2-18A0A075B6J9 118 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 RRN3P1Q2M238 152 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 YAE1D1Q9NRH1 226 aa7.99□□□□□ -1.13
COL3A1-202ENST00000317840 SVEP1Q4LDE5 3571 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 AZU1P20160 251 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 TAL2Q16559 108 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 C20orf78Q9BR46 151 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 JPT2Q9H910 190 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 DEFB112Q30KQ8 113 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 E9PLD3 99 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 NDUFA4O00483 81 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 LGALS3P17931 250 aaKnown RBP7.98□□□□□ -1.13
COL3A1-202ENST00000317840 ZFAND2AQ8N6M9 145 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 PIFOQ8TCI5 191 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 BAALCQ8WXS3 180 aa7.98□□□□□ -1.13
COL3A1-202ENST00000317840 GAGE12HA6NDE8 117 aa7.97□□□□□ -1.13
COL3A1-202ENST00000317840 LENEPQ9Y5L5 61 aa7.97□□□□□ -1.13
COL3A1-202ENST00000317840 TRAV12-2A0A075B6T6 113 aa7.97□□□□□ -1.13
COL3A1-202ENST00000317840 LYRM7Q5U5X0 104 aa7.97□□□□□ -1.13
COL3A1-202ENST00000317840 LINC01356Q8N9X3 169 aa7.97□□□□□ -1.13
COL3A1-202ENST00000317840 DAZ1Q9NQZ3 744 aaKnown RBP7.97□□□□□ -1.13
COL3A1-202ENST00000317840 SDHAF1A6NFY7 115 aa7.97□□□□□ -1.13
COL3A1-202ENST00000317840 RPL39P62891 51 aaKnown RBP7.97□□□□□ -1.13
COL3A1-202ENST00000317840 TOMM6Q96B49 74 aa7.97□□□□□ -1.13
COL3A1-202ENST00000317840 NDUFS8O00217 210 aa7.96□□□□□ -1.13
COL3A1-202ENST00000317840 ZNF575Q86XF7 245 aa7.96□□□□□ -1.13
COL3A1-202ENST00000317840 ZNF843Q8N446 348 aa7.96□□□□□ -1.13
COL3A1-202ENST00000317840 LGALS1P09382 135 aaKnown RBP7.96□□□□□ -1.14
COL3A1-202ENST00000317840 KRTAP10-9P60411 292 aa7.96□□□□□ -1.14
COL3A1-202ENST00000317840 TRAV12-1A0A0B4J245 112 aa7.96□□□□□ -1.14
COL3A1-202ENST00000317840 VCYO14598 125 aa7.96□□□□□ -1.14
COL3A1-202ENST00000317840 PRSS2P07478 247 aa7.96□□□□□ -1.14
COL3A1-202ENST00000317840 DLX4Q92988 240 aaPredicted RBP7.96□□□□□ -1.14
COL3A1-202ENST00000317840 USMG5Q96IX5 58 aa7.95□□□□□ -1.14
COL3A1-202ENST00000317840 DUX3Q96PT4 197 aa7.95□□□□□ -1.14
COL3A1-202ENST00000317840 NEXN-AS1Q8NBZ9 246 aa7.95□□□□□ -1.14
COL3A1-202ENST00000317840 C11orf86A6NJI1 115 aa7.95□□□□□ -1.14
COL3A1-202ENST00000317840 CIDEAO60543 219 aa7.95□□□□□ -1.14
COL3A1-202ENST00000317840 PAPPA-AS1Q5QFB9 102 aa7.95□□□□□ -1.14
COL3A1-202ENST00000317840 SYT8Q8NBV8 401 aa7.95□□□□□ -1.14
COL3A1-202ENST00000317840 IGHV3OR16-12A0A075B7B8 117 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 SNRPD3P62318 126 aaKnown RBP7.94□□□□□ -1.14
COL3A1-202ENST00000317840 PMVKQ15126 192 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 PLEKHB2Q96CS7 222 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 PSMG3-AS1Q96PY0 264 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 RAX2Q96IS3 184 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 SPAG8Q99932 426 aaPredicted RBP7.94□□□□□ -1.14
COL3A1-202ENST00000317840 KLK9Q9UKQ9 250 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 TRAV2A0A0B4J234 112 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 DYNLRB2Q8TF09 96 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 AJUBAQ96IF1 538 aa7.94□□□□□ -1.14
COL3A1-202ENST00000317840 HELZ2Q9BYK8 2649 aaKnown RBP7.93□□□□□ -1.14
COL3A1-202ENST00000317840 IGHV3-73A0A0B4J1V6 119 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 PHLDA1Q8WV24 401 aaPredicted RBP7.93□□□□□ -1.14
COL3A1-202ENST00000317840 SPANXB1Q9NS25 103 aaPredicted RBP7.93□□□□□ -1.14
COL3A1-202ENST00000317840 U3KQE9 123 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 IGHV4-4A0A075B6R2 117 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 DSCR9P59020 149 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 SPINK13Q1W4C9 94 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 ZFP2Q6ZN57 461 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 AVPP01185 164 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 SYNJ2BPP57105 145 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 SUMO4Q6EEV6 95 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 Q6ZS46 218 aa7.93□□□□□ -1.14
COL3A1-202ENST00000317840 RNASE3P12724 160 aaKnown RBP7.92□□□□□ -1.14
COL3A1-202ENST00000317840 INSL3P51460 131 aa7.92□□□□□ -1.14
COL3A1-202ENST00000317840 LINC01546A6NGU7 62 aa7.92□□□□□ -1.14
COL3A1-202ENST00000317840 TRBV7-3A0A075B6L6 115 aa7.92□□□□□ -1.14
COL3A1-202ENST00000317840 DEFB136Q30KP8 78 aa7.92□□□□□ -1.14
COL3A1-202ENST00000317840 PTH2Q96A98 100 aa7.92□□□□□ -1.14
COL3A1-202ENST00000317840 OPRPNQ99935 248 aaPredicted RBP7.92□□□□□ -1.14
COL3A1-202ENST00000317840 VCX2Q9H322 139 aa7.92□□□□□ -1.14
COL3A1-202ENST00000317840 A0A1B0GV72 72 aa7.91□□□□□ -1.14
COL3A1-202ENST00000317840 ZNF876PQ49A33 203 aa7.91□□□□□ -1.14
COL3A1-202ENST00000317840 C10orf99Q6UWK7 81 aa7.91□□□□□ -1.14
COL3A1-202ENST00000317840 CHD6Q8TD26 2715 aa7.91□□□□□ -1.14
COL3A1-202ENST00000317840 EDN2P20800 178 aa7.91□□□□□ -1.14
COL3A1-202ENST00000317840 GPHB5Q86YW7 130 aa7.9□□□□□ -1.14
COL3A1-202ENST00000317840 J3QKU1 62 aa7.9□□□□□ -1.14
COL3A1-202ENST00000317840 J3QQQ9 107 aa7.9□□□□□ -1.14
COL3A1-202ENST00000317840 MDFICQ9P1T7 246 aa7.9□□□□□ -1.14
COL3A1-202ENST00000317840 HRNRQ86YZ3 2850 aaPredicted RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms