RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 DUX4L9Q6RFH8 374 aaPredicted RBP12.18□□□□□ -0.46
HCFC1-201ENST00000310441 THSD7BQ9C0I4 1608 aa12.18□□□□□ -0.46
HCFC1-201ENST00000310441 GYPEP15421 78 aa12.18□□□□□ -0.46
HCFC1-201ENST00000310441 K7ENP7 123 aa12.18□□□□□ -0.46
HCFC1-201ENST00000310441 IGHV1-58A0A0C4DH39 117 aa12.18□□□□□ -0.46
HCFC1-201ENST00000310441 ATP5EP2Q5VTU8 51 aa12.18□□□□□ -0.46
HCFC1-201ENST00000310441 C15orf65H3BRN8 121 aa12.17□□□□□ -0.46
HCFC1-201ENST00000310441 TMEM61Q8N0U2 210 aa12.17□□□□□ -0.46
HCFC1-201ENST00000310441 GPR179Q6PRD1 2367 aa12.17□□□□□ -0.46
HCFC1-201ENST00000310441 CCL25O15444 150 aa12.17□□□□□ -0.46
HCFC1-201ENST00000310441 ADAMTS20P59510 1910 aa12.17□□□□□ -0.46
HCFC1-201ENST00000310441 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.17□□□□□ -0.46
HCFC1-201ENST00000310441 IGKV2-29A2NJV5 120 aaPredicted RBP12.17□□□□□ -0.46
HCFC1-201ENST00000310441 HOXB4P17483 251 aaPredicted RBP12.17□□□□□ -0.46
HCFC1-201ENST00000310441 DIRC1Q969H9 104 aa12.17□□□□□ -0.46
HCFC1-201ENST00000310441 LINC00205P59089 165 aa12.16□□□□□ -0.46
HCFC1-201ENST00000310441 RNASE13Q5GAN3 156 aaKnown RBP12.16□□□□□ -0.46
HCFC1-201ENST00000310441 SP5Q6BEB4 398 aaPredicted RBP12.16□□□□□ -0.46
HCFC1-201ENST00000310441 ZFYVE26Q68DK2 2539 aa12.16□□□□□ -0.46
HCFC1-201ENST00000310441 B9D2Q9BPU9 175 aa12.16□□□□□ -0.46
HCFC1-201ENST00000310441 LRP4O75096 1905 aa12.15□□□□□ -0.46
HCFC1-201ENST00000310441 ZNF491Q8N8L2 437 aa12.15□□□□□ -0.46
HCFC1-201ENST00000310441 IGHV4-28A0A0C4DH34 117 aa12.15□□□□□ -0.46
HCFC1-201ENST00000310441 MED14OSP0DP75 135 aa12.15□□□□□ -0.46
HCFC1-201ENST00000310441 SEM1Q6ZVN7 128 aa12.15□□□□□ -0.46
HCFC1-201ENST00000310441 Q9HAA7 133 aa12.15□□□□□ -0.46
HCFC1-201ENST00000310441 NOTCH2Q04721 2471 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 LOXP28300 417 aaPredicted RBP12.14□□□□□ -0.47
HCFC1-201ENST00000310441 Q8N1Y9 231 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 LYPD6BQ8NI32 183 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 IGLV1-44P01699 117 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 ZNF726P1Q15940 193 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 A4D1N5 150 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 C5orf24Q7Z6I8 188 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 TIMM17AQ99595 171 aa12.14□□□□□ -0.47
HCFC1-201ENST00000310441 CRYGBP07316 175 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 PCP2Q8IVA1 136 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 FGF23Q9GZV9 251 aaPredicted RBP12.13□□□□□ -0.47
HCFC1-201ENST00000310441 CASC2Q6XLA1 102 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 Q6ZQT7 251 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 TOMM6Q96B49 74 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 IGLV3-9A0A075B6K5 115 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 LY6HO94772 140 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 COA6Q5JTJ3 125 aaKnown RBP12.13□□□□□ -0.47
HCFC1-201ENST00000310441 IL17DQ8TAD2 202 aa12.13□□□□□ -0.47
HCFC1-201ENST00000310441 NDUFC1O43677 76 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 IGKV4-1P06312 121 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 NPBQ8NG41 125 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 C11orf86A6NJI1 115 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 TRBV10-2A0A0K0K1G8 114 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 K7EN84 100 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 KLK5Q9Y337 293 aaPredicted RBP12.12□□□□□ -0.47
HCFC1-201ENST00000310441 IGHV4-4A0A075B6R2 117 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 SPTSSBQ8NFR3 76 aa12.12□□□□□ -0.47
HCFC1-201ENST00000310441 H0Y9J4 135 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 FAM120AOSQ5T036 256 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 A0A096LPF7 62 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 PIFOQ8TCI5 191 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 IGKV3D-7A0A0C4DH55 119 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 HHLA3Q9XRX5 114 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 RS1O15537 224 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 FOXI1Q12951 378 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 C5orf38Q86SI9 138 aa12.11□□□□□ -0.47
HCFC1-201ENST00000310441 PRR20EP86478 221 aa12.1□□□□□ -0.47
HCFC1-201ENST00000310441 PRR20CP86479 221 aa12.1□□□□□ -0.47
HCFC1-201ENST00000310441 PRR20DP86480 221 aa12.1□□□□□ -0.47
HCFC1-201ENST00000310441 PRR20BP86481 221 aa12.1□□□□□ -0.47
HCFC1-201ENST00000310441 PRR20AP86496 221 aa12.1□□□□□ -0.47
HCFC1-201ENST00000310441 GNRH2O43555 120 aa12.1□□□□□ -0.47
HCFC1-201ENST00000310441 USP17L23D6RBM5 183 aa12.09□□□□□ -0.47
HCFC1-201ENST00000310441 LINC00643Q86TS7 51 aa12.09□□□□□ -0.47
HCFC1-201ENST00000310441 E9PLD3 99 aa12.09□□□□□ -0.47
HCFC1-201ENST00000310441 ZNF581Q9P0T4 197 aa12.09□□□□□ -0.47
HCFC1-201ENST00000310441 UPK3BQ9BT76 320 aa12.08□□□□□ -0.48
HCFC1-201ENST00000310441 WDR87Q6ZQQ6 2873 aa12.08□□□□□ -0.48
HCFC1-201ENST00000310441 A0A0J9YY99 117 aa12.08□□□□□ -0.48
HCFC1-201ENST00000310441 AGPAT4-IT1Q9H0P7 198 aa12.08□□□□□ -0.48
HCFC1-201ENST00000310441 ZNRD1Q9P1U0 126 aa12.08□□□□□ -0.48
HCFC1-201ENST00000310441 CTRLP40313 264 aa12.07□□□□□ -0.48
HCFC1-201ENST00000310441 GP9P14770 177 aa12.07□□□□□ -0.48
HCFC1-201ENST00000310441 RPL39LQ96EH5 51 aaKnown RBP12.07□□□□□ -0.48
HCFC1-201ENST00000310441 UQCRQO14949 82 aa12.06□□□□□ -0.48
HCFC1-201ENST00000310441 FAM240AA0A1B0GVK7 77 aa12.06□□□□□ -0.48
HCFC1-201ENST00000310441 Q6ZUT4 128 aa12.06□□□□□ -0.48
HCFC1-201ENST00000310441 TPSG1Q9NRR2 321 aa12.06□□□□□ -0.48
HCFC1-201ENST00000310441 WIPF3A6NGB9 483 aa12.06□□□□□ -0.48
HCFC1-201ENST00000310441 COX7BP24311 80 aa12.06□□□□□ -0.48
HCFC1-201ENST00000310441 TMEM89A2RUT3 159 aa12.05□□□□□ -0.48
HCFC1-201ENST00000310441 TMEM263Q8WUH6 116 aaKnown RBP12.05□□□□□ -0.48
HCFC1-201ENST00000310441 BPY2O14599 106 aa12.05□□□□□ -0.48
HCFC1-201ENST00000310441 TTC28Q96AY4 2481 aa12.05□□□□□ -0.48
HCFC1-201ENST00000310441 H7C423 109 aa12.05□□□□□ -0.48
HCFC1-201ENST00000310441 WDR86Q86TI4 376 aa12.05□□□□□ -0.48
HCFC1-201ENST00000310441 LECT2O14960 151 aa12.05□□□□□ -0.48
HCFC1-201ENST00000310441 G3V4G9 280 aa12.04□□□□□ -0.48
HCFC1-201ENST00000310441 Q6ZR03 302 aa12.04□□□□□ -0.48
HCFC1-201ENST00000310441 IGLV10-54A0A075B6I4 117 aa12.04□□□□□ -0.48
HCFC1-201ENST00000310441 NDUFC2-KCTD14E9PQ53 114 aa12.04□□□□□ -0.48
HCFC1-201ENST00000310441 INSL3P51460 131 aa12.04□□□□□ -0.48
HCFC1-201ENST00000310441 RNF144BQ7Z419 303 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms