RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 LELP1Q5T871 98 aa13.32□□□□□ -0.28
PDZRN3-202ENST00000308537 GTSF1LQ9H1H1 148 aa13.32□□□□□ -0.28
PDZRN3-202ENST00000308537 TMSB15BA0A087X1C1 80 aa13.31□□□□□ -0.28
PDZRN3-202ENST00000308537 PDE6DO43924 150 aa13.31□□□□□ -0.28
PDZRN3-202ENST00000308537 BAGE2Q86Y30 109 aa13.31□□□□□ -0.28
PDZRN3-202ENST00000308537 RPL19P84098 196 aaKnown RBP13.3□□□□□ -0.28
PDZRN3-202ENST00000308537 Q8N3U1 123 aa13.3□□□□□ -0.28
PDZRN3-202ENST00000308537 C10orf126Q8N4M7 172 aa13.3□□□□□ -0.28
PDZRN3-202ENST00000308537 ATP6V0E2Q8NHE4 81 aa13.3□□□□□ -0.28
PDZRN3-202ENST00000308537 SFRP2Q96HF1 295 aa13.3□□□□□ -0.28
PDZRN3-202ENST00000308537 DNAH8Q96JB1 4490 aa13.3□□□□□ -0.28
PDZRN3-202ENST00000308537 IBA57-AS1B1ANH7 110 aa13.29□□□□□ -0.28
PDZRN3-202ENST00000308537 ERVFC1-1P60608 527 aa13.29□□□□□ -0.28
PDZRN3-202ENST00000308537 MEF2BQ02080 365 aaPredicted RBP13.29□□□□□ -0.28
PDZRN3-202ENST00000308537 ALKAL2Q6UX46 152 aa13.29□□□□□ -0.28
PDZRN3-202ENST00000308537 C11orf52Q96A22 123 aa13.29□□□□□ -0.28
PDZRN3-202ENST00000308537 GAGE12JA6NER3 117 aa13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 NKX2-5P52952 324 aaPredicted RBP13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 GAGE1Q13065 139 aa13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 GAGE4Q13068 117 aa13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 GAGE5Q13069 117 aa13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 GAGE13Q4V321 117 aa13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 DERL1Q9BUN8 251 aa13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 VAX2Q9UIW0 290 aa13.28□□□□□ -0.28
PDZRN3-202ENST00000308537 LRCOL1A6NCL2 159 aa13.27□□□□□ -0.29
PDZRN3-202ENST00000308537 CXCL1P09341 107 aa13.27□□□□□ -0.29
PDZRN3-202ENST00000308537 BCL2P10415 239 aa13.27□□□□□ -0.29
PDZRN3-202ENST00000308537 RPL35P42766 123 aaKnown RBP13.27□□□□□ -0.29
PDZRN3-202ENST00000308537 OR10J3Q5JRS4 329 aa13.27□□□□□ -0.29
PDZRN3-202ENST00000308537 SSBP4Q9BWG4 385 aaPredicted RBP13.27□□□□□ -0.29
PDZRN3-202ENST00000308537 PHLDA3Q9Y5J5 127 aa13.27□□□□□ -0.29
PDZRN3-202ENST00000308537 A0A087WWL8 130 aa13.26□□□□□ -0.29
PDZRN3-202ENST00000308537 TRAV8-6A0A0B4J262 113 aa13.26□□□□□ -0.29
PDZRN3-202ENST00000308537 RHODO00212 210 aa13.26□□□□□ -0.29
PDZRN3-202ENST00000308537 IGLV2-8P01709 118 aa13.26□□□□□ -0.29
PDZRN3-202ENST00000308537 SYT8Q8NBV8 401 aa13.26□□□□□ -0.29
PDZRN3-202ENST00000308537 PGPEP1Q9NXJ5 209 aa13.26□□□□□ -0.29
PDZRN3-202ENST00000308537 M0R381 172 aa13.25□□□□□ -0.29
PDZRN3-202ENST00000308537 SNAI2O43623 268 aa13.25□□□□□ -0.29
PDZRN3-202ENST00000308537 ZFP82Q8N141 532 aa13.25□□□□□ -0.29
PDZRN3-202ENST00000308537 OR10AG1Q8NH19 301 aa13.25□□□□□ -0.29
PDZRN3-202ENST00000308537 BIN3Q9NQY0 253 aa13.25□□□□□ -0.29
PDZRN3-202ENST00000308537 IGHV3-30P01768 117 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 IGHV3-33P01772 117 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 IGHV3-30-3P0DP02 117 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 IGHV3-30-5P0DP03 117 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 FAM74A4Q5TZK3 123 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 CDPF1Q6NVV7 123 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 MAPKAPK5-AS1Q8N8E1 139 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 SMIM12Q96EX1 92 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 MED9Q9NWA0 146 aa13.24□□□□□ -0.29
PDZRN3-202ENST00000308537 GNG4P50150 75 aa13.23□□□□□ -0.29
PDZRN3-202ENST00000308537 KRTAP10-1P60331 282 aa13.22□□□□□ -0.29
PDZRN3-202ENST00000308537 Q8N1X5 172 aa13.22□□□□□ -0.29
PDZRN3-202ENST00000308537 DAZAP1Q96EP5 407 aaKnown RBP13.22□□□□□ -0.29
PDZRN3-202ENST00000308537 BOLA1Q9Y3E2 137 aa13.22□□□□□ -0.29
PDZRN3-202ENST00000308537 OR5AL1P0C617 328 aa13.21□□□□□ -0.29
PDZRN3-202ENST00000308537 LAGE3Q14657 143 aa13.21□□□□□ -0.29
PDZRN3-202ENST00000308537 CENPWQ5EE01 88 aa13.21□□□□□ -0.29
PDZRN3-202ENST00000308537 PRR27Q6MZM9 219 aa13.21□□□□□ -0.29
PDZRN3-202ENST00000308537 TRBV20OR9-2A0A075B6H5 130 aa13.2□□□□□ -0.3
PDZRN3-202ENST00000308537 RBFOX3A6NFN3 312 aa13.2□□□□□ -0.3
PDZRN3-202ENST00000308537 EREGO14944 169 aa13.2□□□□□ -0.3
PDZRN3-202ENST00000308537 XGP55808 180 aa13.2□□□□□ -0.3
PDZRN3-202ENST00000308537 OR10G8Q8NGN5 311 aa13.2□□□□□ -0.3
PDZRN3-202ENST00000308537 LYPD6BQ8NI32 183 aa13.2□□□□□ -0.3
PDZRN3-202ENST00000308537 Q9HAA7 133 aa13.2□□□□□ -0.3
PDZRN3-202ENST00000308537 TRBV10-1A0A0K0K1A3 114 aa13.19□□□□□ -0.3
PDZRN3-202ENST00000308537 C19orf71A6NCJ1 209 aa13.19□□□□□ -0.3
PDZRN3-202ENST00000308537 UBE2D3P61077 147 aa13.19□□□□□ -0.3
PDZRN3-202ENST00000308537 UBE2D2P62837 147 aa13.19□□□□□ -0.3
PDZRN3-202ENST00000308537 DAZ4Q86SG3 579 aaKnown RBP13.19□□□□□ -0.3
PDZRN3-202ENST00000308537 DAZ3Q9NR90 486 aaKnown RBP13.19□□□□□ -0.3
PDZRN3-202ENST00000308537 KIF25-AS1Q9Y6Z4 181 aa13.19□□□□□ -0.3
PDZRN3-202ENST00000308537 MUC21A0A0G2JKD1 596 aa13.18□□□□□ -0.3
PDZRN3-202ENST00000308537 MUC21A0A140T8X8 626 aa13.18□□□□□ -0.3
PDZRN3-202ENST00000308537 WFDC2Q14508 124 aa13.18□□□□□ -0.3
PDZRN3-202ENST00000308537 NIT1Q86X76 327 aa13.18□□□□□ -0.3
PDZRN3-202ENST00000308537 A0A087WWC5 75 aa13.17□□□□□ -0.3
PDZRN3-202ENST00000308537 XKRY2A2RUG3 117 aa13.17□□□□□ -0.3
PDZRN3-202ENST00000308537 RAB19A4D1S5 217 aa13.17□□□□□ -0.3
PDZRN3-202ENST00000308537 TMEM250H0YL14 139 aa13.17□□□□□ -0.3
PDZRN3-202ENST00000308537 IGLC6P0CF74 106 aa13.17□□□□□ -0.3
PDZRN3-202ENST00000308537 RPS20P60866 119 aaKnown RBP13.17□□□□□ -0.3
PDZRN3-202ENST00000308537 TRBV7-3A0A075B6L6 115 aa13.16□□□□□ -0.3
PDZRN3-202ENST00000308537 RAB4BP61018 213 aa13.16□□□□□ -0.3
PDZRN3-202ENST00000308537 NEXN-AS1Q8NBZ9 246 aa13.16□□□□□ -0.3
PDZRN3-202ENST00000308537 DNAJC30Q96LL9 226 aa13.16□□□□□ -0.3
PDZRN3-202ENST00000308537 EIF5A2Q9GZV4 153 aaKnown RBP13.16□□□□□ -0.3
PDZRN3-202ENST00000308537 NDUFS6O75380 124 aaKnown RBP13.15□□□□□ -0.3
PDZRN3-202ENST00000308537 GZMBP10144 247 aa13.15□□□□□ -0.3
PDZRN3-202ENST00000308537 Q8N814 137 aa13.14□□□□□ -0.31
PDZRN3-202ENST00000308537 VPS13BQ7Z7G8 4022 aa13.13□□□□□ -0.31
PDZRN3-202ENST00000308537 PSCAO43653 123 aa13.13□□□□□ -0.31
PDZRN3-202ENST00000308537 P01737 135 aa13.13□□□□□ -0.31
PDZRN3-202ENST00000308537 RPL36AP83881 106 aaKnown RBP13.13□□□□□ -0.31
PDZRN3-202ENST00000308537 TEX261Q6UWH6 196 aa13.13□□□□□ -0.31
PDZRN3-202ENST00000308537 RPL36ALQ969Q0 106 aaKnown RBP13.13□□□□□ -0.31
PDZRN3-202ENST00000308537 TOR2AQ5JU69 321 aa13.12□□□□□ -0.31
PDZRN3-202ENST00000308537 SPANXN1Q5VSR9 72 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms