RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 PRB3Q04118 309 aaPredicted RBP9.96□□□□□ -0.82
NUP54-201ENST00000264883 HES1Q14469 280 aa9.96□□□□□ -0.82
NUP54-201ENST00000264883 KLK9Q2XQG4 91 aa9.96□□□□□ -0.82
NUP54-201ENST00000264883 RPL39LQ96EH5 51 aaKnown RBP9.96□□□□□ -0.82
NUP54-201ENST00000264883 KLK9Q9UKQ9 250 aa9.96□□□□□ -0.82
NUP54-201ENST00000264883 USP24Q9UPU5 2620 aa9.96□□□□□ -0.82
NUP54-201ENST00000264883 A0A0B4J2C4 111 aa9.95□□□□□ -0.82
NUP54-201ENST00000264883 EBI3Q14213 229 aa9.95□□□□□ -0.82
NUP54-201ENST00000264883 LINC00694P0DN24 101 aa9.95□□□□□ -0.82
NUP54-201ENST00000264883 C5orf47Q569G3 176 aa9.95□□□□□ -0.82
NUP54-201ENST00000264883 RNF182Q8N6D2 247 aa9.95□□□□□ -0.82
NUP54-201ENST00000264883 Q8N6K4 173 aa9.95□□□□□ -0.82
NUP54-201ENST00000264883 DNAJC30Q96LL9 226 aa9.95□□□□□ -0.82
NUP54-201ENST00000264883 GRNP28799 593 aaKnown RBP9.94□□□□□ -0.82
NUP54-201ENST00000264883 MINOS1Q5TGZ0 78 aa9.94□□□□□ -0.82
NUP54-201ENST00000264883 MINOS1-NBL1R4GNA1 71 aa9.94□□□□□ -0.82
NUP54-201ENST00000264883 SMG1Q96Q15 3661 aaKnown RBP9.94□□□□□ -0.82
NUP54-201ENST00000264883 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.94□□□□□ -0.82
NUP54-201ENST00000264883 TMEM170BQ5T4T1 132 aa9.94□□□□□ -0.82
NUP54-201ENST00000264883 C2orf82Q6UX34 121 aa9.94□□□□□ -0.82
NUP54-201ENST00000264883 C14orf178Q8N769 122 aaPredicted RBP9.94□□□□□ -0.82
NUP54-201ENST00000264883 AGPAT4-IT1Q9H0P7 198 aa9.94□□□□□ -0.82
NUP54-201ENST00000264883 BEX4Q9NWD9 120 aaPredicted RBP9.94□□□□□ -0.82
NUP54-201ENST00000264883 TRBV7-7A0A0K0K1E9 115 aa9.93□□□□□ -0.82
NUP54-201ENST00000264883 IGHV3-23P01764 117 aa9.93□□□□□ -0.82
NUP54-201ENST00000264883 LGALS3P17931 250 aaKnown RBP9.93□□□□□ -0.82
NUP54-201ENST00000264883 AMELXQ99217 191 aa9.93□□□□□ -0.82
NUP54-201ENST00000264883 LYNX1G3V0Z9 82 aa9.93□□□□□ -0.82
NUP54-201ENST00000264883 J3QQQ9 107 aa9.93□□□□□ -0.82
NUP54-201ENST00000264883 LYNX1P0DP58 116 aa9.93□□□□□ -0.82
NUP54-201ENST00000264883 IGHV3OR16-8A0A075B7F1 116 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 RNF223E7ERA6 249 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 M0R2P5 195 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 BUB3O43684 328 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 TSHBP01222 138 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 NDPQ00604 133 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 PMVKQ15126 192 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 FAM110DQ8TAY7 271 aaPredicted RBP9.92□□□□□ -0.82
NUP54-201ENST00000264883 LINC01560Q8TB33 94 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 PKDREJQ9NTG1 2253 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 FAM240AA0A1B0GVK7 77 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 MUSTN1Q8IVN3 82 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 ZFAND3Q9H8U3 227 aa9.92□□□□□ -0.82
NUP54-201ENST00000264883 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.91□□□□□ -0.82
NUP54-201ENST00000264883 M0R381 172 aa9.91□□□□□ -0.82
NUP54-201ENST00000264883 TMEM101Q96IK0 257 aa9.91□□□□□ -0.82
NUP54-201ENST00000264883 DPH3P1Q9H4G8 78 aa9.91□□□□□ -0.82
NUP54-201ENST00000264883 LENEPQ9Y5L5 61 aa9.91□□□□□ -0.82
NUP54-201ENST00000264883 CACNA1BQ00975 2339 aa9.91□□□□□ -0.82
NUP54-201ENST00000264883 TRBV30A0A0K0K1B3 111 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 MGPP08493 103 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 C9orf153Q5TBE3 101 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 TP53TG1Q9Y2A0 90 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 SPTBN1Q01082 2364 aaKnown RBP9.9□□□□□ -0.82
NUP54-201ENST00000264883 IGHV1-69DA0A0B4J2H0 117 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 FAM236AA0A1B0GUQ0 79 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 FAM236BA0A1B0GV22 79 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 H7C423 109 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 TRIAP1O43715 76 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 C9orf47Q6ZRZ4 202 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 DUX3Q96PT4 197 aa9.9□□□□□ -0.82
NUP54-201ENST00000264883 IGHV7-81A0A0B4J1V7 117 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 LOC107984640A0A0U1RRK4 108 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 VMO1Q7Z5L0 202 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 ZNRF2Q8NHG8 242 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 IGIPA6NJ69 53 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 H3BT86 120 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 SPRY2O43597 315 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 NDUFA7O95182 113 aa9.89□□□□□ -0.83
NUP54-201ENST00000264883 TRGV11A0A075B6L2 103 aa9.88□□□□□ -0.83
NUP54-201ENST00000264883 IGHV3-35A0A0C4DH35 117 aa9.88□□□□□ -0.83
NUP54-201ENST00000264883 ABCA4P78363 2273 aa9.88□□□□□ -0.83
NUP54-201ENST00000264883 C3orf22Q8N5N4 141 aa9.88□□□□□ -0.83
NUP54-201ENST00000264883 TMEM141Q96I45 108 aa9.88□□□□□ -0.83
NUP54-201ENST00000264883 BBC3Q96PG8 261 aaPredicted RBP9.88□□□□□ -0.83
NUP54-201ENST00000264883 SMIM9A6NGZ8 99 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 NPFFO15130 113 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 GNLYP22749 145 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 C15orf32Q32M92 178 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 METTL26Q96S19 204 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 SPXQ9BT56 116 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 HRNRQ86YZ3 2850 aaPredicted RBP9.87□□□□□ -0.83
NUP54-201ENST00000264883 TRBV7-1A0A0A6YYK4 115 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 PPP1R17O96001 155 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 DEFB121Q5J5C9 76 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 POM121L12Q8N7R1 296 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 EEF1AKMT3Q96AZ1 226 aa9.87□□□□□ -0.83
NUP54-201ENST00000264883 LEPROTO15243 131 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 HERVK_113P63121 156 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 ZNF876PQ49A33 203 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 LRRC75A-AS1Q8N1F1 130 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 Q8N9W7 124 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 ITLN2Q8WWU7 325 aaPredicted RBP9.86□□□□□ -0.83
NUP54-201ENST00000264883 IMUPQ9GZP8 106 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 ZFYVE26Q68DK2 2539 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 IGHV3-66A0A0C4DH42 116 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 J3KT08 172 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 MED14OSP0DP75 135 aa9.86□□□□□ -0.83
NUP54-201ENST00000264883 RPL39P62891 51 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms